SRR3549068_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549068_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1727682
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	6738	0.39000232681708785	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6384	0.36951244499855873	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	2322	0.13439973328425023	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAATCG	35	1.212411E-7	45.000004	12
GCGATTC	65	0.0	45.000004	9
TGCGTCG	35	1.212411E-7	45.000004	1
ATCTACG	20	7.034275E-4	45.0	33
GTTTCGA	40	6.8193913E-9	45.0	23
CGTTGCC	20	7.034275E-4	45.0	21
TAGCGCA	20	7.034275E-4	45.0	29
ATAGCCG	20	7.034275E-4	45.0	20
CGTCTAG	20	7.034275E-4	45.0	32
CCGTCTA	25	3.8916245E-5	45.0	31
ATCCGTC	20	7.034275E-4	45.0	15
TATTCGA	25	3.8916245E-5	45.0	13
ACCCGTG	20	7.034275E-4	45.0	31
ACCCGTA	25	3.8916245E-5	45.0	19
CGTCCGA	50	2.1827873E-11	45.0	20
TCGGTAA	20	7.034275E-4	45.0	10
TAGTCGA	20	7.034275E-4	45.0	44
TGCGTAT	20	7.034275E-4	45.0	29
TACCGGC	20	7.034275E-4	45.0	30
TACCCGT	30	2.16614E-6	44.999996	18