SRR3549064_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549064_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1969924
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8412	0.4270215500699519	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	6669	0.3385409792458998	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	3733	0.18949969643498937	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCATA	45	3.8562575E-10	45.000004	32
ACCGAAA	45	3.8562575E-10	45.000004	14
CTTGCGA	45	3.8562575E-10	45.000004	13
GCGATAC	115	0.0	45.000004	9
ACGTCCA	40	6.8193913E-9	45.000004	26
CGCAACA	20	7.034513E-4	45.000004	36
GCTCGAT	20	7.034513E-4	45.000004	31
TATCGTG	20	7.034513E-4	45.000004	1
CTTACGT	80	0.0	45.000004	22
CGGACGT	20	7.034513E-4	45.000004	23
CGTATGT	25	3.891824E-5	45.0	31
CACGGAT	25	3.891824E-5	45.0	39
TGTGCGA	35	1.2125201E-7	45.0	35
TACGACT	25	3.891824E-5	45.0	15
ACGGATT	25	3.891824E-5	45.0	45
ACCAGTA	55	1.8189894E-12	45.0	22
AACGAGT	25	3.891824E-5	45.0	29
CGTGTCA	25	3.891824E-5	45.0	31
ATCGGCA	25	3.891824E-5	45.0	11
CGAAGTA	35	1.2125201E-7	45.0	18