SRR3549062_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549062_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1699436
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6134	0.36094327765211515	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	4206	0.24749387443834306	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1809	0.10644708009010048	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAATACG	20	7.03424E-4	45.000004	1
ACGTTAT	30	2.166118E-6	45.000004	11
TAGCGAA	20	7.03424E-4	45.000004	33
CGCGATA	20	7.03424E-4	45.000004	37
TCTAGCG	20	7.03424E-4	45.000004	1
CGCAATA	20	7.03424E-4	45.000004	13
ACGTTCA	25	3.8915976E-5	45.0	21
CCGTATG	25	3.8915976E-5	45.0	38
CTACGTT	35	1.2123928E-7	45.0	23
TATAGCG	130	0.0	43.269234	1
TACGGGA	345	0.0	42.391304	4
TACGGGC	145	0.0	41.896553	4
AGGGTAC	925	0.0	41.837837	6
GTATGCG	70	0.0	41.785713	1
AACGGGA	305	0.0	41.311478	4
TATTTCG	60	3.6379788E-12	41.250004	17
ATACCGG	60	3.6379788E-12	41.250004	2
TATGCCA	775	0.0	41.225807	10
ACGGGTA	230	0.0	41.086956	5
CAGGGTA	570	0.0	40.657894	5