SRR3549060_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549060_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1714680
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6784	0.39564233559614626	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	4364	0.25450812979681336	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGGAT	25	3.8916107E-5	45.000004	26
GTATTCG	30	2.166129E-6	45.000004	9
ATTACGA	45	3.8562575E-10	45.000004	12
TACGCGC	30	2.166129E-6	45.000004	27
GCGATCG	25	3.8916107E-5	45.000004	9
ACGTATG	40	6.8175723E-9	45.000004	1
TGTAACG	70	0.0	45.000004	1
TAATGCG	35	1.2123928E-7	45.000004	1
AAATGCG	55	1.8189894E-12	45.0	1
CGGGTAT	250	0.0	43.199997	6
TATAGCG	90	0.0	42.500004	1
CGGTCTA	290	0.0	41.89655	31
AACGACG	60	3.6379788E-12	41.250004	13
GATCGAT	55	6.184564E-11	40.909092	10
CTAAGCG	110	0.0	40.909092	1
TCACGAC	305	0.0	40.573772	25
CATAGCG	50	1.0822987E-9	40.500004	1
AGTACGG	200	0.0	40.500004	2
CGGGATA	145	0.0	40.344826	6
CGTTTTT	5175	0.0	40.130436	1