SRR3549057_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549057_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	5031159
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	39349	0.782106071384347	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	7262	0.14434049887908532	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	6136	0.12195996985982752	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGGTCTA	540	42.5	31
CGTTTTT	28315	42.409504	1
TACGTAG	425	41.294117	1
ACGGGAT	1755	38.71795	5
CGAATAT	895	38.463688	14
GTTGATC	3275	38.33588	16
GGCGATA	2290	38.122272	8
CGCTATA	95	37.894737	43
GCGTTAG	440	37.840908	1
CGCATCG	335	37.61194	21
GGGCGAT	9890	37.58342	7
TAGTAGG	2360	37.372883	2
GCTACGA	940	37.340427	10
ATAGCGG	790	37.310123	2
AACGGGA	1285	37.29572	4
CGTATGG	545	37.15596	2
GGTACCT	3485	37.058823	8
ACGGGTA	365	36.9863	5
TATGGGC	1725	36.913044	4
GTAGCAT	3325	36.8797	29