SRR3549035_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549035_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1800160
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13492	0.7494889343169495	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3348	0.18598346813616567	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2844	0.15798595680383964	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	2473	0.13737667762865524	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CATTACG	20	7.0343516E-4	45.000004	37
TATTACG	45	3.8562575E-10	45.0	1
TACGTAG	45	3.8562575E-10	45.0	1
ATACCGG	30	2.1661908E-6	44.999996	2
ATTACGG	140	0.0	43.392857	2
CGTTTTT	10080	0.0	40.736603	1
TCGATTG	45	1.929402E-8	40.0	1
CGCATCG	85	0.0	39.705883	21
CACGACG	155	0.0	39.193546	26
ACTCACG	35	6.2502622E-6	38.571426	42
TATAGCG	100	0.0	38.25	1
TATACTA	1110	0.0	37.905403	44
ATAGGGC	930	0.0	37.741936	4
CTATGCG	60	1.5643309E-10	37.499996	1
AACGCGT	30	1.1401788E-4	37.499996	32
TGGGCGA	1105	0.0	37.46606	6
GTTGATC	1070	0.0	37.219627	16
ATAACGC	115	0.0	37.173912	11
TACGGGA	480	0.0	37.031246	4
CGAGGGA	810	0.0	36.944447	4