SRR3549029_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549029_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	322734
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3860	1.1960314066692694	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	758	0.2348683435894576	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	411	0.12734945806763465	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	356	0.1103075597860777	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	348	0.10782873821785124	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	337	0.10442035856153985	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACAACGA	20	7.025738E-4	45.0	13
ACACGTC	20	7.025738E-4	45.0	41
ACCGAAT	20	7.025738E-4	45.0	43
TCGATAG	20	7.025738E-4	45.0	1
ACGGGCC	20	7.025738E-4	45.0	5
GTAGCGA	20	7.025738E-4	45.0	38
CTACGGG	70	0.0	45.0	3
AACGAGC	20	7.025738E-4	45.0	15
TCCGTTA	20	7.025738E-4	45.0	24
ACGTCGG	20	7.025738E-4	45.0	43
ACGTATG	25	3.88455E-5	45.0	1
ATAACGC	20	7.025738E-4	45.0	11
CCGCCTC	20	7.025738E-4	45.0	31
GGTTACG	25	3.88455E-5	45.0	1
CGAGGGT	30	2.160632E-6	44.999996	4
CGTTTTT	3035	0.0	42.701813	1
TTGTTAG	75	0.0	42.000004	1
TAGGGTC	70	0.0	41.785713	5
GCGTAGG	65	0.0	41.538464	2
TAAGGGC	180	0.0	41.250004	4