SRR3549017_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549017_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	777845
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3133	0.40277947405974196	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2072	0.2663769774183803	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1351	0.173684988654552	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1023	0.13151720458446092	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTTACG	30	2.1645938E-6	45.000004	1
ATAACGG	30	2.1645938E-6	45.000004	2
CCAACGG	60	0.0	45.000004	2
TACGTAG	30	2.1645938E-6	45.000004	1
TGATTCG	50	2.1827873E-11	45.0	15
TACTCGC	40	6.8102963E-9	45.0	45
TCGTAAG	20	7.0318783E-4	45.0	1
TATAGCG	20	7.0318783E-4	45.0	1
TTACGCA	20	7.0318783E-4	45.0	29
AATACGG	40	6.8102963E-9	45.0	2
ATCGACT	25	3.889638E-5	45.0	17
GCGTAAG	65	0.0	41.538464	1
ACGGGTA	175	0.0	41.142857	5
TCGAACG	55	6.002665E-11	40.909092	1
AGGGTAT	620	0.0	40.64516	6
AGGGCGC	100	0.0	40.5	6
CGTTTTT	2645	0.0	40.406425	1
CGTAAGG	140	0.0	40.178574	2
TATGGGC	225	0.0	40.0	4
GCGATAC	45	1.9268555E-8	40.0	9