SRR3549005_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549005_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	115545
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	335	0.2899303301743909	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	230	0.199056644597343	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTGATC	35	1.1992779E-7	45.000004	16
TTGATAG	20	7.006932E-4	45.000004	1
ACACGGG	20	7.006932E-4	45.000004	3
CCGATAG	20	7.006932E-4	45.000004	11
GAACTTT	20	7.006932E-4	45.000004	40
GGGTACC	35	1.1992779E-7	45.000004	7
GGCCGAT	20	7.006932E-4	45.000004	8
AGGGTAA	20	7.006932E-4	45.000004	6
CGACAAT	20	7.006932E-4	45.000004	20
AGAACTT	20	7.006932E-4	45.000004	39
ACGGGAC	20	7.006932E-4	45.000004	5
AGAAATC	20	7.006932E-4	45.000004	43
ATGAGAG	20	7.006932E-4	45.000004	1
TACGAAG	20	7.006932E-4	45.000004	1
TGTTATG	20	7.006932E-4	45.000004	1
TACCTGG	35	1.1992779E-7	45.000004	10
AGCTGCG	20	7.006932E-4	45.000004	1
GCGATGC	35	1.1992779E-7	45.000004	9
TCATCGA	20	7.006932E-4	45.000004	16
CGTAAGG	20	7.006932E-4	45.000004	2