##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3549003_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 845132 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.15001680210902 31.0 31.0 33.0 30.0 33.0 2 31.51167983226289 31.0 31.0 34.0 30.0 34.0 3 31.64783134468935 31.0 31.0 34.0 30.0 34.0 4 35.46699923798886 37.0 35.0 37.0 33.0 37.0 5 35.39033665746889 37.0 35.0 37.0 33.0 37.0 6 35.44450097736212 37.0 35.0 37.0 33.0 37.0 7 35.850300308117546 37.0 35.0 37.0 35.0 37.0 8 35.907240525740356 37.0 35.0 37.0 35.0 37.0 9 37.80817197786855 39.0 37.0 39.0 35.0 39.0 10 37.05621725363612 39.0 37.0 39.0 33.0 39.0 11 36.741171793282 39.0 35.0 39.0 32.0 39.0 12 36.17305344017266 38.0 35.0 39.0 32.0 39.0 13 35.9561050818097 38.0 35.0 39.0 31.0 39.0 14 36.971673064089394 39.0 35.0 41.0 31.0 41.0 15 37.175293326959576 39.0 35.0 41.0 32.0 41.0 16 37.23362504318852 39.0 35.0 41.0 32.0 41.0 17 37.157316253555656 39.0 35.0 41.0 32.0 41.0 18 37.07420497626406 39.0 35.0 41.0 32.0 41.0 19 37.012072670304754 38.0 35.0 41.0 32.0 41.0 20 36.87097518494152 38.0 35.0 41.0 31.0 41.0 21 36.77258463766607 38.0 35.0 41.0 31.0 41.0 22 36.65098706474255 38.0 35.0 41.0 31.0 41.0 23 36.54733816729221 38.0 35.0 40.0 31.0 41.0 24 36.48259916794063 38.0 35.0 40.0 31.0 41.0 25 36.36841700468093 38.0 35.0 40.0 30.0 41.0 26 36.206133479740444 38.0 35.0 40.0 30.0 41.0 27 36.07049431331437 38.0 35.0 40.0 30.0 41.0 28 36.00796680281897 38.0 35.0 40.0 30.0 41.0 29 36.095244293199165 38.0 35.0 40.0 30.0 41.0 30 36.07268687021672 38.0 35.0 40.0 30.0 41.0 31 35.96426238741404 38.0 35.0 40.0 30.0 41.0 32 35.79134265416527 38.0 34.0 40.0 29.0 41.0 33 35.55508725264219 38.0 34.0 40.0 28.0 41.0 34 35.333275748640446 38.0 34.0 40.0 27.0 41.0 35 35.19509378416626 38.0 34.0 40.0 26.0 41.0 36 35.04523553717053 38.0 34.0 40.0 25.0 41.0 37 34.924773881476504 38.0 34.0 40.0 25.0 41.0 38 34.874761575706515 37.0 34.0 40.0 25.0 41.0 39 34.79802326737125 37.0 34.0 40.0 24.0 41.0 40 34.68764761007748 37.0 34.0 40.0 24.0 41.0 41 34.629797475423956 37.0 34.0 40.0 24.0 41.0 42 34.567185954383454 37.0 33.0 40.0 24.0 41.0 43 34.463897947302904 37.0 33.0 40.0 24.0 41.0 44 34.35963612784749 37.0 33.0 40.0 23.0 41.0 45 34.34195368297497 37.0 33.0 40.0 23.0 41.0 46 34.32284542533001 37.0 33.0 40.0 23.0 41.0 47 34.30530733660541 36.0 33.0 40.0 23.0 41.0 48 34.227487540407886 36.0 33.0 40.0 23.0 41.0 49 34.192577017554655 36.0 33.0 40.0 24.0 41.0 50 34.08514527908066 36.0 33.0 40.0 23.0 41.0 51 33.85410444758925 36.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 1.0 13 4.0 14 9.0 15 28.0 16 60.0 17 188.0 18 431.0 19 896.0 20 1500.0 21 2421.0 22 3523.0 23 5184.0 24 7864.0 25 11107.0 26 14715.0 27 16486.0 28 17371.0 29 19356.0 30 22745.0 31 27436.0 32 33703.0 33 43307.0 34 69510.0 35 95931.0 36 63084.0 37 80003.0 38 115490.0 39 192700.0 40 78.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.446846173142184 23.830360227751406 27.99716493991471 14.7256286591917 2 31.970272099506346 25.277234798824328 29.484388237577086 13.268104864092237 3 28.643217864191627 24.754239574409677 32.7680173038058 13.834525257592897 4 25.031356048522596 27.556168740504443 32.54604014520809 14.866435065764874 5 22.200437328133358 32.52935636089983 31.3314369826252 13.938769328341607 6 20.539868328261147 41.12174192907144 28.296171485637743 10.04221825702967 7 88.73903721548824 3.10566870027404 6.79030021345778 1.3649938707799492 8 89.91849793878353 2.228645939332554 6.345044324436892 1.507811797447026 9 85.10090731388706 4.118883204043866 8.216822934168864 2.5633865479002096 10 44.04708376916269 22.454953782367724 19.098318369201497 14.39964407926809 11 36.99138122802118 25.573046577339397 20.54223482248927 16.89333737215015 12 31.242811773782087 23.156146022159852 28.10424880373717 17.496793400320897 13 21.87492604705537 32.99034943653773 28.398404036292558 16.73632048011435 14 19.550200442061122 34.29653592574888 29.384048882304775 16.769214749885226 15 19.007918289687293 25.250256764623753 39.44673731440769 16.29508763128127 16 19.644623561763133 21.815408717218137 38.89842060175216 19.641547119266576 17 20.092127620300733 23.17413137829357 29.03357108712012 27.700169914285578 18 23.416460387253117 24.397017270674876 31.78462062731029 20.401901714761717 19 27.03979969992853 26.939696994079032 25.78401953777635 20.23648376821609 20 28.399942257540832 24.977399980121447 26.79451257318383 19.828145189153883 21 24.521613191785423 26.886924172791943 28.27641125883294 20.315051376589693 22 24.05612377711411 25.364913409976193 26.693226620220273 23.88573619268943 23 21.969467491468787 28.902585631593645 26.746946039198612 22.381000837738956 24 21.83445899575451 25.505601491837957 33.48033206647009 19.17960744593744 25 20.38237813737972 26.782088478486198 31.741077133512874 21.094456250621203 26 20.19897483470038 30.4973660919241 28.35296734711264 20.95069172626288 27 20.763383708107135 29.448062551175436 29.23945608496661 20.549097655750817 28 19.478850641083287 27.85482031209326 33.49370275885897 19.172626287964484 29 20.200513055948658 25.09690793864154 32.86102052697093 21.84155847843887 30 21.087001793802624 28.018463387967795 30.23918157163615 20.65535324659343 31 25.04543668917992 26.713460145870705 27.009863547942807 21.231239617006576 32 25.782008017682443 26.217797929790848 27.04252116829087 20.957672884235834 33 24.757552666329047 26.851426759370135 26.635957459899757 21.755063114401064 34 19.991196641471394 26.92632630169015 29.355532626855922 23.726944429982535 35 21.609523719371648 26.40960228698002 29.077942853897383 22.90293113975095 36 25.963044826133668 26.939105370522004 26.103851232706845 20.993998570637487 37 22.039042421775534 29.68163553149094 28.257479305007976 20.021842741725553 38 22.67551104442856 30.105356323035927 25.73325823658316 21.485874395952347 39 22.130389098980988 29.79144086367573 26.78031360781511 21.29785642952817 40 23.29470425921631 27.028085553499338 25.852884519814655 23.824325667469697 41 19.821164031180928 25.577542916372824 27.569421108181917 27.03187194426433 42 22.073356588083282 26.87272520742322 25.95641864229493 25.097499562198568 43 21.588580245452782 27.55818026059834 27.14570031663693 23.707539177311947 44 21.135041626633473 29.708140266845888 26.847167069759514 22.30965103676112 45 20.391489140157987 31.027697448445924 25.109450358050577 23.471363053345513 46 22.334262576733575 30.30189366868134 26.19614450760355 21.167699246981535 47 22.460751693226623 26.612174192907144 27.73235423578802 23.194719878078217 48 22.937600280192918 24.885106705224747 28.77136352664436 23.40592948793798 49 21.359148630036493 25.19582739737698 29.374937879526513 24.07008609306002 50 20.32262415811968 29.322401707662234 27.75708410047188 22.597890033746207 51 19.99474638281357 29.884680736263686 26.036169497782595 24.08440338314015 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 230.0 1 455.0 2 680.0 3 3362.0 4 6044.0 5 4719.0 6 3394.0 7 3375.0 8 3356.0 9 3513.0 10 3670.0 11 3682.5 12 3695.0 13 3771.0 14 3847.0 15 3727.5 16 3608.0 17 3617.0 18 3626.0 19 3661.0 20 3696.0 21 3610.5 22 3525.0 23 3834.0 24 4143.0 25 4478.5 26 5664.0 27 6514.0 28 8301.0 29 10088.0 30 11840.5 31 13593.0 32 16223.5 33 18854.0 34 21575.0 35 24296.0 36 26419.5 37 28543.0 38 32586.0 39 36629.0 40 44347.5 41 52066.0 42 59155.0 43 66244.0 44 66749.0 45 67254.0 46 66069.5 47 64885.0 48 65860.5 49 66836.0 50 66101.5 51 65367.0 52 62736.0 53 60105.0 54 54579.0 55 49053.0 56 44084.5 57 39116.0 58 35858.5 59 32601.0 60 30028.0 61 27455.0 62 24300.0 63 21145.0 64 18105.0 65 15065.0 66 13021.0 67 10977.0 68 9117.0 69 7257.0 70 6005.0 71 4753.0 72 3932.5 73 3112.0 74 2604.0 75 1784.0 76 1472.0 77 1101.0 78 730.0 79 575.0 80 420.0 81 279.5 82 139.0 83 94.5 84 50.0 85 50.0 86 50.0 87 38.5 88 27.0 89 17.0 90 7.0 91 5.0 92 3.0 93 2.0 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 845132.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.76630500060501 #Duplication Level Percentage of deduplicated Percentage of total 1 72.15988684618596 21.479332006727162 2 6.461031492521818 3.8464206804983725 3 3.096288878095196 2.7649523734608805 4 2.1115858358256014 2.5141643209656923 5 1.7161843005880522 2.554223266427697 6 1.4110245163336703 2.5200591669911514 7 1.2571592064613086 2.619468906169211 8 1.0851050901856423 2.583965525773986 9 0.9693089597844673 2.596747152308726 >10 9.642841973644655 54.04946345780755 >50 0.07718526748213711 1.4385095339113525 >100 0.011197861966494742 0.454742315414479 >500 7.998472833210459E-4 0.21320510128464043 >1k 3.9992364166052295E-4 0.3647461922591503 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3064 0.36254691574807246 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 954 0.11288177468135156 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03171102265681574 0.0 2 0.0 0.0 0.0 0.10625559084261393 0.0 3 0.0 0.0 0.0 0.17346402692123833 0.0 4 0.0 0.0 0.0 0.28291438497181504 0.0 5 0.0 0.0 0.0 0.5119910262538869 0.0 6 0.0 0.0 0.0 0.913585096765949 0.0 7 0.0 0.0 0.0 1.1298826692161699 0.0 8 0.0 0.0 0.0 1.6195103250143172 0.0 9 0.0 0.0 0.0 1.8781681441478963 0.0 10 0.0 0.0 0.0 2.2029694769574455 0.0 11 0.0 0.0 0.0 2.482097471164268 0.0 12 0.0 0.0 0.0 2.708570968795407 0.0 13 0.0 0.0 0.0 2.8248841601075334 0.0 14 0.0 0.0 0.0 2.8817983462938335 0.0 15 0.0 0.0 0.0 2.9529114978488566 0.0 16 0.0 0.0 0.0 3.0901681630798503 0.0 17 0.0 0.0 0.0 3.2584259026992233 0.0 18 0.0 0.0 0.0 3.461589432183375 0.0 19 0.0 0.0 0.0 3.5717497385023877 0.0 20 0.0 0.0 0.0 3.69504408778747 0.0 21 0.0 0.0 0.0 3.8564389941452935 0.0 22 0.0 0.0 0.0 4.0400789462474505 0.0 23 0.0 0.0 0.0 4.242532527463165 0.0 24 0.0 0.0 0.0 4.412328488330817 0.0 25 0.0 0.0 0.0 4.550886725387277 0.0 26 0.0 0.0 0.0 4.686013545812962 0.0 27 0.0 0.0 0.0 4.818300573164902 0.0 28 0.0 0.0 0.0 4.971294425012897 0.0 29 0.0 0.0 0.0 5.127601368780262 0.0 30 0.0 0.0 0.0 5.323310441445833 0.0 31 0.0 0.0 0.0 5.49949593672941 0.0 32 0.0 0.0 0.0 5.667398702214565 0.0 33 0.0 0.0 0.0 5.845595717592045 0.0 34 0.0 0.0 0.0 6.025804253063427 0.0 35 0.0 0.0 0.0 6.236422239366158 0.0 36 0.0 0.0 0.0 6.429528168380798 0.0 37 0.0 0.0 0.0 6.634703217958851 0.0 38 0.0 0.0 0.0 6.842008112342214 0.0 39 0.0 0.0 0.0 7.046118239517614 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCGTATG 60 0.0 45.000004 1 CTATGCG 35 1.2114106E-7 45.0 1 TCCAACG 20 7.0322264E-4 45.0 43 CGTTTTT 3470 0.0 42.47118 1 TAGGGCG 355 0.0 41.830982 5 CGTTAGG 185 0.0 41.351353 2 TGGGCGA 640 0.0 39.726562 6 TAGGGTA 540 0.0 39.583336 5 GTGTACG 40 3.456771E-7 39.375 1 CGTATGG 150 0.0 39.0 2 ATTTGCG 110 0.0 38.863636 1 GGGCGAT 1875 0.0 38.4 7 AGGGCGA 915 0.0 38.114754 6 ATAGGGC 510 0.0 37.941177 4 GACCGAT 505 0.0 37.871284 9 ACGGGTA 155 0.0 37.741936 5 TTGGGCG 335 0.0 37.611942 5 AAACCGT 30 1.1396658E-4 37.500004 17 TAGGCGA 30 1.1396658E-4 37.500004 5 TACAGCG 30 1.1396658E-4 37.500004 1 >>END_MODULE