##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3549002_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3200787 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.136054039209732 31.0 31.0 33.0 30.0 33.0 2 31.490940509318488 31.0 31.0 34.0 30.0 34.0 3 31.684525711957715 31.0 31.0 34.0 30.0 34.0 4 35.481856180995486 37.0 35.0 37.0 33.0 37.0 5 35.39243067408109 37.0 35.0 37.0 33.0 37.0 6 35.43990399861034 37.0 35.0 37.0 33.0 37.0 7 35.78732886630694 37.0 35.0 37.0 35.0 37.0 8 35.82759146422427 37.0 35.0 37.0 35.0 37.0 9 37.72076304983743 39.0 37.0 39.0 35.0 39.0 10 37.04172755013064 39.0 37.0 39.0 33.0 39.0 11 36.67447474636707 39.0 35.0 39.0 32.0 39.0 12 36.0269421239214 37.0 35.0 39.0 32.0 39.0 13 35.74056599205133 37.0 35.0 39.0 31.0 39.0 14 36.72729144426043 39.0 35.0 41.0 31.0 41.0 15 36.95865891732252 39.0 35.0 41.0 31.0 41.0 16 37.0331809020719 38.0 35.0 41.0 32.0 41.0 17 36.97521172136727 38.0 35.0 41.0 32.0 41.0 18 36.914866562504784 38.0 35.0 41.0 31.0 41.0 19 36.86577488598898 38.0 35.0 41.0 31.0 41.0 20 36.736488557345425 38.0 35.0 41.0 31.0 41.0 21 36.615951639393685 38.0 35.0 41.0 31.0 41.0 22 36.48486887756042 38.0 35.0 40.0 31.0 41.0 23 36.38829856532159 38.0 35.0 40.0 30.0 41.0 24 36.27891827853587 38.0 35.0 40.0 30.0 41.0 25 36.13951162635939 38.0 35.0 40.0 30.0 41.0 26 35.977115628125205 38.0 34.0 40.0 30.0 41.0 27 35.83682325628041 38.0 34.0 40.0 30.0 41.0 28 35.75544327067062 38.0 34.0 40.0 29.0 41.0 29 35.89906607343757 38.0 35.0 40.0 30.0 41.0 30 35.87543501020218 38.0 35.0 40.0 30.0 41.0 31 35.79159625429621 38.0 34.0 40.0 30.0 41.0 32 35.66074437318072 38.0 34.0 40.0 29.0 41.0 33 35.48432213702443 37.0 34.0 40.0 28.0 41.0 34 35.34996455559211 37.0 34.0 40.0 27.0 41.0 35 35.232818678656216 37.0 34.0 40.0 27.0 41.0 36 35.08367692070731 37.0 34.0 40.0 26.0 41.0 37 34.95732861949264 37.0 34.0 40.0 26.0 41.0 38 34.902394004974404 37.0 33.0 40.0 26.0 41.0 39 34.83753464382353 37.0 33.0 40.0 26.0 41.0 40 34.69679113293075 37.0 33.0 40.0 25.0 41.0 41 34.629820728464594 36.0 33.0 40.0 25.0 41.0 42 34.55883662361788 36.0 33.0 40.0 25.0 41.0 43 34.448706208816766 36.0 33.0 40.0 24.0 41.0 44 34.34047345231032 36.0 33.0 40.0 24.0 41.0 45 34.295887230234314 36.0 33.0 40.0 24.0 41.0 46 34.282507708260496 35.0 33.0 40.0 24.0 41.0 47 34.24809679619418 35.0 33.0 40.0 24.0 41.0 48 34.1710897976029 35.0 33.0 40.0 24.0 41.0 49 34.12927539383283 35.0 33.0 40.0 24.0 41.0 50 33.99635714591442 35.0 33.0 40.0 24.0 41.0 51 33.74064534753484 35.0 33.0 39.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 4.0 10 8.0 11 8.0 12 10.0 13 23.0 14 51.0 15 122.0 16 328.0 17 785.0 18 1853.0 19 3371.0 20 5790.0 21 8980.0 22 13649.0 23 19186.0 24 26722.0 25 36934.0 26 48140.0 27 57396.0 28 66712.0 29 76710.0 30 91916.0 31 110713.0 32 136659.0 33 174764.0 34 288440.0 35 391918.0 36 248567.0 37 310595.0 38 427935.0 39 652219.0 40 279.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.99504559347435 23.84835354554989 28.43572533879949 13.720875522176264 2 30.486595952807853 26.191777209792466 30.044767115087634 13.276859722312043 3 29.665985271747232 25.867107058357835 30.373186344483404 14.093721325411531 4 26.241390008144872 28.362524591608253 29.99984066418665 15.396244736060224 5 23.905214561293832 32.90578223418178 28.339686458361648 14.84931674616274 6 22.319135887517664 41.14853628185818 25.88029131585451 10.652036514769648 7 89.41041687559965 3.75126492328293 5.230932267595438 1.6073859335219745 8 90.418825120197 2.9238746595759104 4.798538609410748 1.85876161081634 9 85.55470888878266 4.769983132273406 6.727501705049415 2.947806273894514 10 49.32724358103179 23.174925416780308 14.03520446690142 13.462626535286478 11 39.79814964257228 23.58876113905736 19.758015762998287 16.855073455372068 12 34.99283145051514 22.08691175014145 25.447522749873702 17.47273404946971 13 23.1301239351447 32.54465229957507 26.2921900145183 18.033033750761923 14 20.026543471964864 33.828961439795904 27.576093004626674 18.56840208361256 15 19.306595534160817 23.329418671095578 39.58938848476953 17.774597309974077 16 20.555632099230596 19.6247360414798 38.457479363668995 21.36215249562061 17 21.073973369674395 20.834907165019104 27.54597541167219 30.54514405363431 18 24.767440007723103 23.344914860001616 29.727407665677223 22.16023746659806 19 29.730032020250018 24.653468037704478 24.095167844658206 21.5213320973873 20 31.30064574743649 23.44726468834071 24.079577928803133 21.172511635419664 21 26.036190474405203 25.702866201343603 25.377290022735032 22.88365330151616 22 25.204426286410186 24.36503897322752 24.686397439129813 25.744137301232477 23 24.024903875203194 27.7283680544816 24.673556847112913 23.573171223202294 24 23.434923973385295 24.15430954949517 32.43271108011873 19.978055397000798 25 21.99996438375937 25.20683194476858 29.805169791054514 22.988033880417536 26 21.80729301887317 29.952102404814816 25.380101831205888 22.860502745106125 27 22.020115677800494 27.73477272933188 27.497581063657154 22.747530529210472 28 19.99564482110181 26.785006312510017 32.48101170118474 20.738337165203433 29 21.241650881486336 23.995817278688023 31.345259775174046 23.417272064651602 30 22.19610364575962 26.764886260785236 28.56647443269421 22.472535660760933 31 27.626111953091538 25.70349104767046 23.858351086779596 22.812045912458405 32 28.644142831122473 25.740606919485735 24.686366196813474 20.92888405257832 33 26.432780438061016 26.44137207505529 24.357884482785014 22.76796300409868 34 21.892428330907368 25.7202994138629 27.824219481021384 24.563052774208344 35 22.827104708935646 25.462331607820204 28.19328496397917 23.51727871926498 36 27.718651694098984 25.298684354816487 24.69577013403266 22.28689381705187 37 23.415116344823943 30.01233759072378 25.837708038679235 20.734838025773037 38 23.44813947319831 29.244651393547898 23.984976194917063 23.32223293833673 39 22.833384414520555 29.462472823090067 25.271003662536746 22.43313909985263 40 24.791184168143648 26.031910277066235 25.235574875803984 23.941330678986137 41 21.020299070197424 24.396406258835718 25.65078526000012 28.932509410966738 42 22.752310603610926 26.447339357476768 23.77209105135706 27.028258987555247 43 22.772711836182786 26.533037031205136 25.664156971394846 25.030094161217225 44 22.542955841797657 28.115116688489422 25.96355208890813 23.378375380804783 45 21.22524866540635 29.581443563723546 23.908869912305942 25.284437858564157 46 22.741344550574595 28.81272637010835 25.51859901955363 22.927330059763428 47 23.260123213447194 25.273065655415373 27.406759650048567 24.06005148108887 48 24.38303454744099 23.0924769439516 28.207062825486357 24.31742568312106 49 21.656705054100758 24.39709358979526 28.650078871227606 25.296122484876378 50 21.091000432081238 28.716093885659994 26.784194012285106 23.408711669973666 51 20.824628442942313 29.493840108698265 24.728699535458 24.95283191290142 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 729.0 1 2145.5 2 3562.0 3 10043.5 4 16525.0 5 12346.0 6 8167.0 7 8174.0 8 8181.0 9 8547.5 10 8914.0 11 9091.5 12 9269.0 13 9155.0 14 9041.0 15 9200.5 16 9360.0 17 8752.5 18 8145.0 19 8312.0 20 8479.0 21 9166.0 22 9853.0 23 10626.0 24 11399.0 25 12309.5 26 17984.0 27 22748.0 28 26436.5 29 30125.0 30 36004.0 31 41883.0 32 50712.0 33 59541.0 34 67145.5 35 74750.0 36 79460.5 37 84171.0 38 94617.0 39 105063.0 40 135076.5 41 165090.0 42 200015.0 43 234940.0 44 239680.0 45 244420.0 46 239168.0 47 233916.0 48 233536.5 49 233157.0 50 232864.0 51 232571.0 52 228809.0 53 225047.0 54 210268.0 55 195489.0 56 184355.0 57 173221.0 58 166497.0 59 159773.0 60 150511.0 61 141249.0 62 130008.0 63 118767.0 64 107038.0 65 95309.0 66 80175.0 67 65041.0 68 56321.5 69 47602.0 70 41319.5 71 35037.0 72 29337.0 73 23637.0 74 19422.0 75 11502.5 76 7798.0 77 6559.5 78 5321.0 79 3984.5 80 2648.0 81 1983.5 82 1319.0 83 960.0 84 601.0 85 435.0 86 269.0 87 191.5 88 114.0 89 89.5 90 65.0 91 53.5 92 42.0 93 25.5 94 9.0 95 5.5 96 2.0 97 1.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3200787.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.068996974576663 #Duplication Level Percentage of deduplicated Percentage of total 1 79.65652043233553 14.39313426697175 2 7.191952005320319 2.599027180508668 3 2.2668678114320833 1.2288008287959458 4 1.1031367446348466 0.7973029800540556 5 0.6804418480608646 0.6147450846993558 6 0.48793723956990986 0.5289921903343193 7 0.3675925613770505 0.4649420215579168 8 0.30793842749472816 0.445131081180651 9 0.24278113816423164 0.39481304858764027 >10 4.0557329558379065 19.14193935696964 >50 2.647555646904199 35.14779415515331 >100 0.9862979546814721 23.078863610695706 >500 0.0036716639308769844 0.4052626919218703 >1k 0.0013987291165245654 0.5030084643576566 >5k 1.7484113956557068E-4 0.25624303821159106 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8111 0.253406427856649 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 4920 0.15371219640669623 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 3442 0.10753605285200171 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.02465018759448848 0.0 2 0.0 0.0 0.0 0.07979287593957361 0.0 3 3.124231634282444E-5 0.0 0.0 0.12984306672077836 0.0 4 3.124231634282444E-5 0.0 0.0 0.24875132272156816 0.0 5 3.124231634282444E-5 0.0 0.0 0.4439220729151924 0.0 6 3.124231634282444E-5 0.0 0.0 0.7943983776489969 0.0 7 3.124231634282444E-5 0.0 0.0 0.9899440356387351 0.0 8 3.124231634282444E-5 0.0 0.0 1.4850097804071312 0.0 9 3.124231634282444E-5 0.0 0.0 1.7286686055648188 0.0 10 3.124231634282444E-5 0.0 0.0 2.0130986535498927 0.0 11 3.124231634282444E-5 0.0 0.0 2.2885621567445757 0.0 12 3.124231634282444E-5 0.0 0.0 2.526472395695184 0.0 13 3.124231634282444E-5 0.0 0.0 2.639913246335979 0.0 14 3.124231634282444E-5 0.0 0.0 2.6888387137288423 0.0 15 3.124231634282444E-5 0.0 0.0 2.7458871833708396 0.0 16 3.124231634282444E-5 0.0 0.0 2.863264565870831 0.0 17 3.124231634282444E-5 0.0 0.0 2.9964818027566347 0.0 18 3.124231634282444E-5 0.0 0.0 3.1595042094334924 0.0 19 3.124231634282444E-5 0.0 0.0 3.25748011348459 0.0 20 3.124231634282444E-5 0.0 0.0 3.36389144294825 0.0 21 3.124231634282444E-5 0.0 0.0 3.506418890104215 0.0 22 3.124231634282444E-5 0.0 0.0 3.6659421573506767 0.0 23 3.124231634282444E-5 0.0 0.0 3.8339633346423865 0.0 24 3.124231634282444E-5 0.0 0.0 3.968211567967503 0.0 25 3.124231634282444E-5 0.0 0.0 4.082370991884184 0.0 26 3.124231634282444E-5 0.0 0.0 4.190938041175499 0.0 27 3.124231634282444E-5 0.0 0.0 4.292131903809906 0.0 28 3.124231634282444E-5 0.0 0.0 4.410259101902126 0.0 29 3.124231634282444E-5 0.0 0.0 4.531510531628627 0.0 30 3.124231634282444E-5 0.0 0.0 4.685472666566066 0.0 31 3.124231634282444E-5 0.0 0.0 4.824875882087749 0.0 32 3.124231634282444E-5 0.0 0.0 4.9658724557429155 0.0 33 3.124231634282444E-5 0.0 0.0 5.103713555447457 0.0 34 3.124231634282444E-5 0.0 0.0 5.2454599446948516 0.0 35 3.124231634282444E-5 0.0 0.0 5.417917530907243 0.0 36 6.248463268564887E-5 0.0 0.0 5.571629727313939 0.0 37 6.248463268564887E-5 0.0 0.0 5.72540440835332 0.0 38 6.248463268564887E-5 0.0 0.0 5.884646494752697 0.0 39 6.248463268564887E-5 0.0 0.0 6.0448883352750435 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGAATC 20 7.035175E-4 45.000004 19 TAATGCG 105 0.0 40.714287 1 CTATGCG 85 0.0 39.705883 1 GTACGAG 360 0.0 38.75 1 CGTTTTT 7065 0.0 38.312103 1 GGGCGAT 7720 0.0 37.976036 7 GCGATAA 425 0.0 37.588238 9 CGTACGT 30 1.1403773E-4 37.499996 31 CGACTTA 30 1.1403773E-4 37.499996 22 AGGGCGA 4395 0.0 37.474403 6 TAGGGCG 1290 0.0 37.15116 5 TATGGGC 1305 0.0 36.551723 4 CATACGA 925 0.0 36.486485 18 ATACTAT 2005 0.0 36.471317 45 TGGGCGA 2175 0.0 36.413795 6 CGTTAGG 555 0.0 36.08108 2 TAGTTCG 75 1.8189894E-12 36.000004 1 GTATACG 175 0.0 36.000004 1 GTCGAAT 25 0.0021076696 36.0 38 GTATCGA 25 0.0021076696 36.0 26 >>END_MODULE