SRR3548998_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548998_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3416425
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	9176	0.268584851123616	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7758	0.2270794763532055	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	4809	0.14076117579048275	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGCGTA	20	7.035242E-4	45.000004	38
CGTGCTA	55	1.8189894E-12	45.0	13
GCGTAAG	350	0.0	41.14286	1
TATAGCG	280	0.0	40.98214	1
CGTTTTT	7145	0.0	40.59132	1
TACGTAG	145	0.0	38.793106	1
ACACCGT	35	6.2519102E-6	38.571426	43
CCGTAAC	35	6.2519102E-6	38.571426	34
ACCGTAT	35	6.2519102E-6	38.571426	20
TCGACGA	35	6.2519102E-6	38.571426	28
AATACGG	295	0.0	38.13559	2
GTAGCGT	65	9.094947E-12	38.076927	9
TGTAACG	155	0.0	37.741936	1
TACGGGA	795	0.0	37.641506	4
CGTTAGG	485	0.0	37.57732	2
AGGGTAT	1740	0.0	37.5	6
ACCTACG	30	1.14039336E-4	37.499996	35
ACGTCGA	30	1.14039336E-4	37.499996	34
GCGTAGC	60	1.5643309E-10	37.499996	9
GCGTAAT	60	1.5643309E-10	37.499996	9