##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548995_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 200843 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.216372987856186 31.0 31.0 33.0 30.0 34.0 2 31.56936014698048 31.0 31.0 34.0 30.0 34.0 3 31.772538749172238 31.0 31.0 34.0 30.0 34.0 4 35.55146059359799 37.0 35.0 37.0 33.0 37.0 5 35.46820153054874 37.0 35.0 37.0 33.0 37.0 6 35.52456894190985 37.0 35.0 37.0 33.0 37.0 7 35.81177835423689 37.0 35.0 37.0 35.0 37.0 8 35.84429131211942 37.0 35.0 37.0 35.0 37.0 9 37.7578307434165 39.0 37.0 39.0 35.0 39.0 10 37.144436201411054 39.0 37.0 39.0 33.0 39.0 11 36.76901360764378 39.0 35.0 39.0 32.0 39.0 12 35.86080669976051 37.0 35.0 39.0 32.0 39.0 13 35.466892050009214 37.0 35.0 39.0 30.0 39.0 14 36.393376916297804 38.0 35.0 41.0 31.0 41.0 15 36.69338239321261 38.0 35.0 41.0 31.0 41.0 16 36.82441509039399 38.0 35.0 41.0 32.0 41.0 17 36.77306154558536 38.0 35.0 41.0 32.0 41.0 18 36.72316685172 38.0 35.0 40.0 32.0 41.0 19 36.67493016933625 38.0 35.0 40.0 31.0 41.0 20 36.534765961472395 38.0 35.0 40.0 31.0 41.0 21 36.40343950249697 38.0 35.0 40.0 31.0 41.0 22 36.28704510488292 38.0 35.0 40.0 31.0 41.0 23 36.2264654481361 37.0 35.0 40.0 31.0 41.0 24 36.110862713661916 37.0 35.0 40.0 31.0 41.0 25 35.99123195729998 37.0 35.0 40.0 30.0 41.0 26 35.7969209780774 37.0 34.0 40.0 30.0 41.0 27 35.63701000283804 37.0 34.0 40.0 30.0 41.0 28 35.57903934914336 36.0 34.0 40.0 29.0 41.0 29 35.729993079171294 37.0 34.0 40.0 30.0 41.0 30 35.72417261243857 37.0 34.0 40.0 30.0 41.0 31 35.59838281642875 36.0 34.0 40.0 30.0 41.0 32 35.480917930921166 36.0 34.0 40.0 29.0 41.0 33 35.30675701916422 36.0 34.0 40.0 29.0 41.0 34 35.17471856126427 36.0 34.0 40.0 28.0 41.0 35 35.047011845073015 36.0 34.0 40.0 27.0 41.0 36 34.88434747539122 36.0 34.0 40.0 26.0 41.0 37 34.757651498932 36.0 33.0 40.0 26.0 41.0 38 34.72270380346838 36.0 33.0 40.0 27.0 41.0 39 34.686750347286186 36.0 33.0 40.0 26.0 41.0 40 34.50252187031661 35.0 33.0 40.0 25.0 41.0 41 34.46946122095368 35.0 33.0 40.0 25.0 41.0 42 34.42171746090229 35.0 33.0 40.0 25.0 41.0 43 34.29957230274393 35.0 33.0 40.0 25.0 41.0 44 34.17856733866752 35.0 33.0 40.0 24.0 41.0 45 34.134393531265715 35.0 33.0 40.0 24.0 41.0 46 34.16866905991247 35.0 33.0 40.0 25.0 41.0 47 34.14811569235672 35.0 33.0 39.0 25.0 41.0 48 34.08335864331841 35.0 33.0 39.0 25.0 41.0 49 34.0665594519102 35.0 33.0 39.0 25.0 41.0 50 33.924667526376325 35.0 33.0 39.0 24.0 41.0 51 33.661317546541326 35.0 33.0 39.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 3.0 12 2.0 13 2.0 14 2.0 15 12.0 16 18.0 17 53.0 18 101.0 19 201.0 20 323.0 21 512.0 22 834.0 23 1172.0 24 1577.0 25 2326.0 26 2886.0 27 3519.0 28 4214.0 29 4702.0 30 5898.0 31 6978.0 32 8622.0 33 11699.0 34 20649.0 35 29886.0 36 14406.0 37 17743.0 38 25156.0 39 37324.0 40 23.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.91433607345041 23.792215810359334 28.62434837161365 12.66909974457661 2 29.9985560860971 26.17218424341401 30.2808661491812 13.54839352130769 3 29.968184104001633 25.56673620688797 30.368994687392643 14.096085001717759 4 26.72585053997401 28.39232634445811 29.331866184034293 15.549956931533588 5 24.70935008937329 32.062855065897246 28.138894559431993 15.088900285297472 6 22.263658678669408 42.127930771796876 24.90402951559178 10.704381033941935 7 88.75390230179792 4.448748524967263 4.990465189227407 1.8068839840074087 8 90.4218718103195 3.1034190885417963 4.68873697365604 1.7859721274826605 9 86.17875654117894 4.541856076636975 6.415956742331074 2.8634306398530196 10 54.5968741753509 21.523777278769984 11.86100586029884 12.01834268558028 11 46.214705018347665 21.203626713403008 17.17211951623905 15.409548752010277 12 40.988732492543924 21.060231125804734 22.443898965858907 15.507137415792435 13 23.5128931553502 37.02942099052493 23.137475540596387 16.320210313528477 14 18.118132073310996 39.50946759409091 25.939166413566817 16.433233919031284 15 17.55948676329272 22.322411037477032 44.30674706113731 15.811355138092939 16 19.1253864959197 17.455923283360637 42.72790189351882 20.69078832720085 17 19.824439985461282 18.243603212459483 26.796552531081492 35.135404270997746 18 24.370279272864874 22.765543235263365 30.80465836499156 22.0595191268802 19 31.753658330138467 23.687656527735594 22.7516019975802 21.80708314454574 20 32.819167210208974 23.05830922660984 22.316934122672933 21.805589440508257 21 25.194803901554945 26.284709947570988 25.40043715738164 23.12004899349243 22 25.171402538301063 23.99336795407358 24.138755147055164 26.6964743605702 23 23.39837584580991 29.301494201938826 23.019472921635305 24.280657030615956 24 23.788232599592718 23.199215307478976 33.81248039513451 19.2000716977938 25 21.791648202825094 23.667242572556674 31.499230742420696 23.041878482197536 26 20.47171173503682 31.219410186065733 24.442972869355668 23.865905209541783 27 21.862350193932574 28.849897681273433 27.17296594852696 22.114786176267035 28 18.593129957230275 27.484652191014874 34.25013567811674 19.672082173638113 29 19.736809348595667 24.641635506340773 33.09948566790976 22.522069477153796 30 21.940520705227467 27.524484298681056 28.85188928665674 21.683105709434734 31 29.055033035754295 25.96655098758732 23.023954033747753 21.954461942910633 32 30.72399834696753 26.075093480977678 23.147931468858758 20.05297670319603 33 28.762267044407817 25.958584566054082 23.754375308076458 21.52477308146164 34 21.287772040847827 26.732323257469766 27.37909710569948 24.600807595982932 35 22.46481082238365 25.549309659784008 28.30818101701329 23.677698500819048 36 30.00602460628451 25.522920888455165 23.793211613050993 20.677842892209338 37 23.489491792096313 30.40683518967552 25.609057821283294 20.494615196944878 38 23.37248497582689 31.22837241029062 22.2835747325025 23.115567881379985 39 23.01001279606459 30.269912319573 24.436002250514083 22.28407263384833 40 25.595116583600124 25.13455783870984 24.080002788247537 25.190322789442497 41 19.85979098101502 23.791717909013506 25.012074107636312 31.33641700233516 42 23.13100282310063 27.339762899379117 22.49767231120826 27.031561966311994 43 23.674711092744083 26.438561463431636 24.476830160871923 25.409897282952354 44 22.23776780868639 28.86881793241487 26.108452871148113 22.78496138775063 45 20.46623482023272 32.00360480574379 22.2890516473066 25.241108726716888 46 23.33364867085236 29.996066579367962 25.133064134672356 21.537220615107323 47 23.597038482795018 25.6220032562748 26.6491737327166 24.13178452821358 48 24.949836439407896 22.419501799913366 28.582026757218326 24.048635003460415 49 21.88973476795308 23.07274836563883 29.929347799027102 25.108169067380988 50 20.627554856280778 30.282359853218683 25.75942402772315 23.330661262777394 51 20.562827681323224 31.952320967123576 23.337133980273148 24.147717371280056 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 43.0 1 127.0 2 211.0 3 552.0 4 893.0 5 671.5 6 450.0 7 470.0 8 490.0 9 510.5 10 531.0 11 568.0 12 605.0 13 563.0 14 521.0 15 515.5 16 510.0 17 499.5 18 489.0 19 477.5 20 466.0 21 486.5 22 507.0 23 575.0 24 643.0 25 698.5 26 834.5 27 915.0 28 1126.5 29 1338.0 30 1701.0 31 2064.0 32 2489.5 33 2915.0 34 3394.5 35 3874.0 36 4212.5 37 4551.0 38 5542.0 39 6533.0 40 9123.0 41 11713.0 42 14323.5 43 16934.0 44 17039.0 45 17144.0 46 16590.0 47 16036.0 48 15343.0 49 14650.0 50 14801.5 51 14953.0 52 14483.0 53 14013.0 54 12937.0 55 11861.0 56 11035.0 57 10209.0 58 9829.5 59 9450.0 60 9439.5 61 9429.0 62 8462.0 63 7495.0 64 6451.5 65 5408.0 66 4729.0 67 4050.0 68 3373.5 69 2697.0 70 2308.0 71 1919.0 72 1710.5 73 1502.0 74 1267.0 75 785.5 76 539.0 77 394.5 78 250.0 79 186.5 80 123.0 81 98.5 82 74.0 83 53.0 84 32.0 85 22.0 86 12.0 87 8.5 88 5.0 89 4.5 90 4.0 91 3.5 92 3.0 93 2.5 94 2.0 95 1.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 200843.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.678973128264364 #Duplication Level Percentage of deduplicated Percentage of total 1 63.16699410609037 20.010655088800704 2 6.763064833005894 4.284938982190069 3 4.543811394891946 4.3182983723605 4 3.663654223968566 4.642432148494097 5 3.311591355599214 5.245390678291003 6 2.8275049115913555 5.374347126860284 7 2.6153241650294694 5.79955487619683 8 2.3544204322200395 5.966849728394815 9 2.0589390962671907 5.870256867304312 >10 8.666404715127701 37.41828194161609 >50 0.02200392927308448 0.45607763277784136 >100 0.006286836935166995 0.6129165567134528 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 463 0.23052832311805738 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 426 0.21210597332244588 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03335939017043163 0.0 2 0.0 0.0 0.0 0.11252570415697834 0.0 3 0.0 0.0 0.0 0.16231583873971211 0.0 4 0.0 0.0 0.0 0.27235203616755377 0.0 5 0.0 0.0 0.0 0.4735041798817982 0.0 6 0.0 0.0 0.0 0.7289275702912225 0.0 7 0.0 0.0 0.0 0.8509134000189202 0.0 8 0.0 0.0 0.0 1.2019338488271933 0.0 9 0.0 0.0 0.0 1.3159532570216537 0.0 10 0.0 0.0 0.0 1.5195949074650348 0.0 11 0.0 0.0 0.0 1.7486295265456102 0.0 12 0.0 0.0 0.0 1.960237598522229 0.0 13 0.0 0.0 0.0 2.0558346569210775 0.0 14 0.0 0.0 0.0 2.0891940470915094 0.0 15 0.0 0.0 0.0 2.141971589749207 0.0 16 0.0 0.0 0.0 2.2539993925603583 0.0 17 0.0 0.0 0.0 2.392913868046185 0.0 18 0.0 0.0 0.0 2.566183536394099 0.0 19 0.0 0.0 0.0 2.653316271913883 0.0 20 0.0 0.0 0.0 2.7334783885920846 0.0 21 0.0 0.0 0.0 2.8569579223572643 0.0 22 0.0 0.0 0.0 2.982429061505753 0.0 23 0.0 0.0 0.0 3.134288971983091 0.0 24 0.0 0.0 0.0 3.24681467614007 0.0 25 0.0 0.0 0.0 3.33096000358489 0.0 26 0.0 0.0 0.0 3.4260591606379114 0.0 27 0.0 0.0 0.0 3.520162514999278 0.0 28 0.0 0.0 0.0 3.618746981473091 0.0 29 0.0 0.0 0.0 3.7178293492927312 0.0 30 0.0 0.0 0.0 3.8437983897870476 0.0 31 0.0 0.0 0.0 3.9463660670274794 0.0 32 0.0 0.0 0.0 4.049431645613738 0.0 33 0.0 0.0 0.0 4.156978336312443 0.0 34 0.0 0.0 0.0 4.271495645852731 0.0 35 0.0 0.0 0.0 4.41190382537604 0.0 36 0.0 0.0 0.0 4.541856076636975 0.0 37 0.0 0.0 0.0 4.647411161952371 0.0 38 0.0 0.0 0.0 4.773380202446687 0.0 39 0.0 0.0 0.0 4.908809368511723 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTTGATG 20 7.0193695E-4 45.000004 1 GGTACAT 20 7.0193695E-4 45.000004 8 CCCTCGT 20 7.0193695E-4 45.000004 14 GTACACT 20 7.0193695E-4 45.000004 18 GGATACA 20 7.0193695E-4 45.000004 8 GTTGTAG 20 7.0193695E-4 45.000004 1 GCTAGTT 20 7.0193695E-4 45.000004 9 TGAGCTT 20 7.0193695E-4 45.000004 30 CGATCTG 20 7.0193695E-4 45.000004 10 CGATAGT 20 7.0193695E-4 45.000004 12 TACGTAG 20 7.0193695E-4 45.000004 1 CTAGCGA 20 7.0193695E-4 45.000004 14 ACTATAG 25 3.879275E-5 45.0 1 CGACAGG 25 3.879275E-5 45.0 2 CAGGGCG 55 1.8189894E-12 45.0 5 AATGCGG 25 3.879275E-5 45.0 2 CTTGCGG 25 3.879275E-5 45.0 2 GTACTGG 25 3.879275E-5 45.0 2 GCGATTG 25 3.879275E-5 45.0 9 GCGATCT 25 3.879275E-5 45.0 9 >>END_MODULE