SRR3548986_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548986_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4361256
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	5397	0.12374875494582296	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5060	0.11602162312875006	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	5058	0.11597576477968732	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATACG	100	0.0	45.0	1
TCTAGCG	175	0.0	45.0	1
ATCGTAC	20	7.0354587E-4	45.0	27
TCGAATA	25	3.8926053E-5	45.0	41
ATTGGGC	1090	0.0	42.522938	4
TATTACG	75	0.0	42.0	1
CGTTTTT	4165	0.0	40.94838	1
CGTATTT	760	0.0	40.855267	1
ACTATCG	50	1.0822987E-9	40.5	1
ACTCGAT	50	1.0822987E-9	40.5	13
AATCGAC	50	1.0822987E-9	40.5	35
CGAATAT	685	0.0	40.07299	14
CGTATCA	45	1.9304935E-8	40.000004	22
CGCATTA	90	0.0	40.000004	12
ATCGATA	45	1.9304935E-8	40.000004	36
CAACCCG	85	0.0	39.705883	23
CGTATCT	40	3.4611912E-7	39.375	33
GCGAAGT	40	3.4611912E-7	39.375	37
TATATCG	40	3.4611912E-7	39.375	12
ATCCGTT	40	3.4611912E-7	39.375	17