##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548986_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4361256 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.218437074090584 31.0 31.0 33.0 30.0 34.0 2 31.541663685873978 31.0 31.0 34.0 30.0 34.0 3 31.65930617235035 31.0 31.0 34.0 30.0 34.0 4 30.329971916347034 35.0 33.0 37.0 0.0 37.0 5 32.86593242863982 35.0 33.0 37.0 19.0 37.0 6 34.4801128390537 35.0 33.0 37.0 30.0 37.0 7 35.44912153746535 36.0 35.0 37.0 33.0 37.0 8 35.61739829076761 37.0 35.0 37.0 35.0 37.0 9 37.634924434612415 39.0 37.0 39.0 35.0 39.0 10 37.082289597308666 39.0 37.0 39.0 33.0 39.0 11 36.64829306053119 39.0 35.0 39.0 32.0 39.0 12 35.67494570371471 37.0 35.0 39.0 31.0 39.0 13 35.264866588890904 37.0 35.0 39.0 30.0 39.0 14 36.10833782745154 38.0 35.0 40.0 30.0 41.0 15 36.41090617014915 38.0 35.0 40.0 31.0 41.0 16 36.56826565558179 38.0 35.0 40.0 32.0 41.0 17 36.510120479054656 38.0 35.0 40.0 31.0 41.0 18 36.48823389408923 38.0 35.0 40.0 31.0 41.0 19 36.465918304268314 38.0 35.0 40.0 31.0 41.0 20 36.36075616748936 38.0 35.0 40.0 31.0 41.0 21 36.194565739777715 37.0 35.0 40.0 31.0 41.0 22 36.077115629075664 37.0 34.0 40.0 30.0 41.0 23 36.02568732493575 37.0 34.0 40.0 30.0 41.0 24 35.943588956942676 37.0 34.0 40.0 30.0 41.0 25 35.808034887197635 37.0 34.0 40.0 30.0 41.0 26 35.65598855008741 37.0 34.0 40.0 30.0 41.0 27 35.64106991197031 37.0 34.0 40.0 30.0 41.0 28 35.65007213518307 36.0 34.0 40.0 30.0 41.0 29 35.687920864998524 36.0 34.0 40.0 30.0 41.0 30 35.649210686095934 36.0 34.0 40.0 30.0 41.0 31 35.537591923060695 36.0 34.0 40.0 30.0 41.0 32 35.43879744734086 36.0 34.0 40.0 29.0 41.0 33 35.284408207177016 36.0 34.0 40.0 29.0 41.0 34 35.198210790652965 36.0 34.0 40.0 28.0 41.0 35 35.081382060580715 36.0 34.0 40.0 28.0 41.0 36 34.9088216788925 36.0 33.0 40.0 27.0 41.0 37 34.84245914479682 36.0 33.0 40.0 27.0 41.0 38 34.80964497383322 35.0 33.0 40.0 27.0 41.0 39 34.75162269768158 35.0 33.0 40.0 27.0 41.0 40 34.62007274968495 35.0 33.0 40.0 26.0 41.0 41 34.58733928941571 35.0 33.0 40.0 26.0 41.0 42 34.51486154447251 35.0 33.0 40.0 26.0 41.0 43 34.446644728032474 35.0 33.0 40.0 26.0 41.0 44 34.3695174050778 35.0 33.0 39.0 26.0 41.0 45 34.27836361818706 35.0 33.0 39.0 26.0 41.0 46 34.20719031398294 35.0 33.0 39.0 26.0 41.0 47 34.117807576533 35.0 33.0 39.0 26.0 41.0 48 34.005536937065834 35.0 33.0 39.0 26.0 41.0 49 33.972766331533855 35.0 33.0 39.0 26.0 41.0 50 33.81375479907623 35.0 33.0 39.0 25.0 40.0 51 33.722627610027935 35.0 33.0 39.0 24.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 4.0 12 3.0 13 7.0 14 32.0 15 115.0 16 314.0 17 877.0 18 1997.0 19 3816.0 20 6831.0 21 11345.0 22 17078.0 23 25145.0 24 34866.0 25 47572.0 26 61502.0 27 76618.0 28 92456.0 29 113024.0 30 138679.0 31 172990.0 32 219926.0 33 316100.0 34 469546.0 35 618065.0 36 343510.0 37 427428.0 38 536078.0 39 624943.0 40 388.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.651648974515595 25.352306766674555 29.478320006897096 12.517724251912751 2 28.13116221565531 26.7221644407024 31.499480883488612 13.647192460153681 3 29.496525771475007 26.077625344625492 30.16835058524425 14.25749829865525 4 23.260134236559377 38.502165431242744 25.492266448014057 12.745433884183822 5 23.806100811325912 32.50274691510886 28.8059448929391 14.885207380626131 6 22.601883494112705 41.63364865534149 24.92655785397601 10.837909996569795 7 89.86094831397193 4.239604370850966 4.001301459946401 1.898145855230695 8 91.78195455621041 2.9871211412492182 3.4431594935037064 1.7877648090366627 9 88.16120860596122 4.5583428260115895 4.721690265373094 2.558758302654098 10 57.77895175151379 22.935411266846064 9.09483414869478 10.190802832945371 11 48.644335485007076 20.503405441001398 16.418297848142828 14.433961225848702 12 44.371896536227176 21.063542245628323 19.11967561638207 15.44488560176243 13 23.683980027771817 38.22871209578158 20.031683533367453 18.05562434307915 14 16.23016397111291 39.30888257878006 25.218239883189614 19.24271356691742 15 16.6869360569524 22.95634560319321 43.472981177899214 16.88373716195518 16 18.750676410648676 18.364503253191284 42.0043446199902 20.880475716169837 17 18.993198289667014 20.592599929928443 25.5702027122462 34.84399906815835 18 24.49149969641773 24.977208400515817 28.38017305106602 22.151118852000433 19 32.96078010554758 25.413527662673324 20.11049110623178 21.51520112554732 20 35.164709432328664 24.13630385375222 21.158354382315554 19.540632331603554 21 26.429748677903795 28.367584934248296 23.546404980583574 21.656261407264328 22 25.65735650463995 25.08311825767623 21.96454415883865 27.294981078845176 23 25.092312856663312 29.35085672567719 21.866774158636872 23.69005625902263 24 24.347504480360705 22.977646806332856 33.11830353457811 19.556545178728328 25 21.678594423257888 25.062413213074397 30.183254548689643 23.07573781497807 26 20.473161859794516 34.79759041890685 22.97159350425657 21.757654217042063 27 21.629938714902313 32.10093606062107 26.328355868126064 19.940769356350557 28 18.599985875628487 28.237255506211973 34.6523340982506 18.510424519908945 29 19.562827772549927 24.788340789900893 32.83421106213439 22.814620375414787 30 22.831106451902848 29.532983158979892 26.66988592277087 20.966024466346393 31 30.50082361594917 26.874689309685103 20.772914958443163 21.85157211592257 32 33.947972785821335 26.090419824014 21.408419959754713 18.553187430409956 33 30.351806910669772 26.96195774795151 21.44774349407602 21.238491847302704 34 21.93673107013209 26.701619900322292 25.70502625849067 25.656622771054945 35 24.084483919311317 24.515712904722857 27.115032917122956 24.284770258842865 36 30.80174610249891 26.20105309112788 22.345604110375543 20.651596695997668 37 23.635347248590772 32.2300273132327 25.138354639122305 18.99627079905422 38 23.37987038596221 32.78186375667927 21.23690973426004 22.601356123098483 39 23.922122434454664 30.281804140825486 23.883234554449455 21.9128388702704 40 26.64149960470103 24.8420638458279 24.0222770688077 24.49415948066337 41 19.05153010967483 23.748411008204975 26.156272413268105 31.04378646885209 42 23.1358351814248 25.958691716331263 21.99412279398412 28.91135030825982 43 23.215720425492105 26.526532723600727 23.589305466131773 26.66844138477539 44 22.224629785548018 28.956520782086624 25.524504867405167 23.294344564960188 45 19.844741973413164 34.04707267814593 21.078560854946375 25.029624493494534 46 22.682938126081112 32.017405077803275 22.87157644495072 22.428080351164894 47 23.039372144171313 26.197865935868016 26.043896528889842 24.71886539107083 48 24.049929653292537 21.60753691138516 30.025501827913793 24.317031607408506 49 21.982360127449525 24.164277446680497 29.1268616196802 24.726500806189776 50 19.77471627439435 31.145706649644044 25.172427392475928 23.907149683485677 51 19.395032073329336 32.78037336033473 22.702519641130902 25.122074925205034 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 605.0 1 1578.5 2 2552.0 3 6658.0 4 10764.0 5 8148.0 6 5532.0 7 5757.0 8 5982.0 9 6293.5 10 6605.0 11 6631.5 12 6658.0 13 6680.0 14 6702.0 15 6495.5 16 6289.0 17 6217.0 18 6145.0 19 5971.5 20 5798.0 21 7056.5 22 8315.0 23 7723.0 24 7131.0 25 11269.0 26 22770.5 27 30134.0 28 36460.0 29 42786.0 30 47490.5 31 52195.0 32 59938.0 33 67681.0 34 79639.0 35 91597.0 36 102417.0 37 113237.0 38 136121.0 39 159005.0 40 220307.5 41 281610.0 42 337474.5 43 393339.0 44 393529.5 45 393720.0 46 368741.5 47 343763.0 48 332443.0 49 321123.0 50 294980.5 51 268838.0 52 255695.5 53 242553.0 54 230005.0 55 217457.0 56 223175.0 57 228893.0 58 238439.0 59 247985.0 60 233696.0 61 219407.0 62 194956.5 63 170506.0 64 145425.5 65 120345.0 66 103367.5 67 86390.0 68 74941.0 69 63492.0 70 53928.5 71 44365.0 72 36293.5 73 28222.0 74 22438.0 75 14298.5 76 11943.0 77 8864.0 78 5785.0 79 3982.0 80 2179.0 81 1572.0 82 965.0 83 687.5 84 410.0 85 238.0 86 66.0 87 75.0 88 84.0 89 55.5 90 27.0 91 19.0 92 11.0 93 6.0 94 1.0 95 1.0 96 1.0 97 1.0 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 4361256.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 13.94088065605974 #Duplication Level Percentage of deduplicated Percentage of total 1 77.96933986464526 10.869612618847809 2 9.263974386494462 2.582959226458271 3 3.2958302658651286 1.378403291971662 4 1.717605335262147 0.9577972397240427 5 0.9631191397195495 0.6713364492198584 6 0.6582647018768958 0.5506073789377527 7 0.4489092466617964 0.43807331631796514 8 0.31378566239255795 0.34995587767978426 9 0.24221664037146745 0.30390419486973325 >10 2.0768988471242666 6.665038748631937 >50 0.8923911737421452 9.18400289933313 >100 2.1185851137631073 61.765142338869374 >500 0.034217180624113 2.993461380797093 >1k 0.004322170184098484 0.9001824829616191 >5k 5.402712730123105E-4 0.3895225553799894 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 5397 0.12374875494582296 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5060 0.11602162312875006 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 5058 0.11597576477968732 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.05314982656372384 0.0 2 0.0 0.0 0.0 0.1529834524733242 0.0 3 0.0 0.0 0.0 0.21645140757616613 0.0 4 0.0 0.0 0.0 0.37645118745609063 0.0 5 0.0 0.0 0.0 0.6430716289069021 0.0 6 0.0 0.0 0.0 0.9208815075290238 0.0 7 0.0 0.0 0.0 1.0647391485388613 0.0 8 0.0 0.0 0.0 1.4287168650498847 0.0 9 0.0 0.0 0.0 1.5322420880590362 0.0 10 2.2929174531373532E-5 0.0 0.0 1.7118233829887537 0.0 11 2.2929174531373532E-5 0.0 0.0 1.9847264182611615 0.0 12 2.2929174531373532E-5 0.0 0.0 2.2137659426550518 0.0 13 2.2929174531373532E-5 0.0 0.0 2.30488648224273 0.0 14 2.2929174531373532E-5 0.0 0.0 2.337789847695251 0.0 15 2.2929174531373532E-5 0.0 0.0 2.395846517608689 0.0 16 2.2929174531373532E-5 0.0 0.0 2.528262500527371 0.0 17 2.2929174531373532E-5 0.0 0.0 2.675995172033011 0.0 18 2.2929174531373532E-5 0.0 0.0 2.845304196772673 0.0 19 2.2929174531373532E-5 0.0 0.0 2.9530713170701284 0.0 20 2.2929174531373532E-5 0.0 0.0 3.0663872976041766 0.0 21 2.2929174531373532E-5 0.0 0.0 3.224346380950809 0.0 22 2.2929174531373532E-5 0.0 0.0 3.3865702907602766 0.0 23 2.2929174531373532E-5 0.0 0.0 3.561703325830907 0.0 24 2.2929174531373532E-5 0.0 0.0 3.6933167876409914 0.0 25 2.2929174531373532E-5 0.0 0.0 3.8115854698738163 0.0 26 2.2929174531373532E-5 0.0 0.0 3.916119576562348 0.0 27 2.2929174531373532E-5 0.0 0.0 4.015861485773823 0.0 28 2.2929174531373532E-5 0.0 0.0 4.127434849043486 0.0 29 2.2929174531373532E-5 0.0 0.0 4.245244947785684 0.0 30 2.2929174531373532E-5 0.0 0.0 4.390363693394747 0.0 31 2.2929174531373532E-5 0.0 0.0 4.534565272022555 0.0 32 2.2929174531373532E-5 0.0 0.0 4.6709709313096965 0.0 33 4.5858349062747064E-5 0.0 0.0 4.801552580265868 0.0 34 4.5858349062747064E-5 0.0 0.0 4.9474509178089985 0.0 35 4.5858349062747064E-5 0.0 0.0 5.125450099696051 0.0 36 4.5858349062747064E-5 0.0 0.0 5.282492016061428 0.0 37 6.878752359412059E-5 0.0 0.0 5.448017727003414 0.0 38 9.171669812549413E-5 0.0 0.0 5.599212703863291 0.0 39 1.1464587265686765E-4 0.0 0.0 5.761046817705725 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTATACG 100 0.0 45.0 1 TCTAGCG 175 0.0 45.0 1 ATCGTAC 20 7.0354587E-4 45.0 27 TCGAATA 25 3.8926053E-5 45.0 41 ATTGGGC 1090 0.0 42.522938 4 TATTACG 75 0.0 42.0 1 CGTTTTT 4165 0.0 40.94838 1 CGTATTT 760 0.0 40.855267 1 ACTATCG 50 1.0822987E-9 40.5 1 ACTCGAT 50 1.0822987E-9 40.5 13 AATCGAC 50 1.0822987E-9 40.5 35 CGAATAT 685 0.0 40.07299 14 CGTATCA 45 1.9304935E-8 40.000004 22 CGCATTA 90 0.0 40.000004 12 ATCGATA 45 1.9304935E-8 40.000004 36 CAACCCG 85 0.0 39.705883 23 CGTATCT 40 3.4611912E-7 39.375 33 GCGAAGT 40 3.4611912E-7 39.375 37 TATATCG 40 3.4611912E-7 39.375 12 ATCCGTT 40 3.4611912E-7 39.375 17 >>END_MODULE