SRR3548979_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548979_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1568550
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	2754	0.175576169073348	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2554	0.16282553951101336	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2391	0.15243377641771064	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1901	0.12119473398999075	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATACG	30	2.1660107E-6	45.000004	1
GTCGTTT	30	2.1660107E-6	45.000004	9
TATGTCG	30	2.1660107E-6	45.000004	34
TCGCGAT	30	2.1660107E-6	45.000004	38
CCCGCAT	30	2.1660107E-6	45.000004	23
TAGGTCG	35	1.2123019E-7	45.0	1
CGCATCG	35	1.2123019E-7	45.0	21
CCAATCG	20	7.0340745E-4	45.0	23
ATTAACG	55	1.8189894E-12	45.0	1
ATTCGAT	50	2.1827873E-11	45.0	14
CGTCTAG	20	7.0340745E-4	45.0	15
TATGCGA	20	7.0340745E-4	45.0	11
CACCTCG	20	7.0340745E-4	45.0	43
CGTAGGT	20	7.0340745E-4	45.0	24
TCGACCG	20	7.0340745E-4	45.0	24
ATGTTCG	25	3.8914593E-5	45.0	1
TGTCGTA	25	3.8914593E-5	45.0	23
TACGTAG	80	0.0	45.0	1
CTATGCG	105	0.0	42.857143	1
CGTACAT	70	0.0	41.785713	35