SRR3548970_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548970_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1790095
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7816	0.4366248718643424	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5288	0.29540331658375674	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2458	0.13731114829101249	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1905	0.10641893307338436	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATACGT	20	7.0343417E-4	45.0	11
ATCGTGT	25	3.8916805E-5	45.0	17
ATATCGT	20	7.0343417E-4	45.0	42
CGAATCG	20	7.0343417E-4	45.0	37
ATGCGAA	20	7.0343417E-4	45.0	40
CGCACGA	20	7.0343417E-4	45.0	40
CACGTTA	20	7.0343417E-4	45.0	16
TCGACGA	35	1.2124292E-7	45.0	31
ACGGTTC	20	7.0343417E-4	45.0	43
TACGCTA	30	2.1661835E-6	44.999996	32
TACTACG	30	2.1661835E-6	44.999996	1
CGGTCTA	115	0.0	43.04348	31
ATTTACG	90	0.0	42.5	1
ACGTTAG	85	0.0	42.352943	1
ACGGGTA	125	0.0	41.399998	5
AGTACGG	300	0.0	41.250004	2
CGCATGG	170	0.0	41.029415	2
GCGAAGT	55	6.184564E-11	40.909092	43
TACGGGC	215	0.0	40.813953	4
AAGGGCG	725	0.0	40.34483	5