SRR3548962_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548962_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1188389
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5048	0.42477673556386	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1392	0.11713336289716583	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTAACG	25	3.890885E-5	45.000004	21
CTATACG	30	2.1655633E-6	45.000004	1
TAGAACG	35	1.2119744E-7	45.000004	1
ACTTCGC	25	3.890885E-5	45.000004	11
TAACGCG	25	3.890885E-5	45.000004	1
TATGCGT	30	2.1655633E-6	45.000004	20
TCGATAG	45	3.8562575E-10	45.000004	1
CCGCTAA	25	3.890885E-5	45.000004	31
TGTTACG	35	1.2119744E-7	45.000004	1
ACTCGAT	25	3.890885E-5	45.000004	19
CGGTCCA	30	2.1655633E-6	45.000004	24
TATCGTC	25	3.890885E-5	45.000004	14
ATCGCGA	30	2.1655633E-6	45.000004	27
TACACGG	65	0.0	45.000004	2
TACGTAA	25	3.890885E-5	45.000004	39
AATCACG	20	7.033383E-4	45.0	1
ACGCATT	20	7.033383E-4	45.0	40
AGTATCG	20	7.033383E-4	45.0	1
TTATACG	40	6.8157533E-9	45.0	36
ACGATTT	20	7.033383E-4	45.0	37