SRR3548957_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548957_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1302565
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4411	0.3386395304648904	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1737	0.1333522703281602	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGTATT	20	7.033633E-4	45.000004	43
CGAGTTA	30	2.1657252E-6	45.000004	38
TACGGTA	30	2.1657252E-6	45.000004	6
CGACAGT	20	7.033633E-4	45.000004	41
CGCCTAG	20	7.033633E-4	45.000004	37
CGCTAAG	40	6.8157533E-9	45.000004	15
ACTCGCT	30	2.1657252E-6	45.000004	10
CGACTAG	20	7.033633E-4	45.000004	16
TGCGTTA	20	7.033633E-4	45.000004	35
ACGTTAG	100	0.0	45.0	1
ATTAACG	25	3.8910937E-5	45.0	1
CTAAGCG	50	2.1827873E-11	45.0	1
ACAATCG	25	3.8910937E-5	45.0	18
GGACGTA	35	1.2121018E-7	45.0	8
CGTACTG	35	1.2121018E-7	45.0	11
CTCGACC	25	3.8910937E-5	45.0	36
ACGTAAG	35	1.2121018E-7	45.0	1
CAATCGA	45	3.8562575E-10	45.0	41
TACGTAG	95	0.0	45.0	1
CTTACGA	35	1.2121018E-7	45.0	44