SRR3548955_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548955_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1903640
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7025	0.36902985858670756	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3385	0.17781723435103275	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2434	0.1278603097224265	No Hit
TTTGATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	2032	0.10674287155134374	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTAC	20	7.034454E-4	45.000004	6
GTACCAC	20	7.034454E-4	45.000004	9
CGAACAC	20	7.034454E-4	45.000004	23
GCGACGG	20	7.034454E-4	45.000004	2
GTCGATG	20	7.034454E-4	45.000004	1
GGTCGTA	20	7.034454E-4	45.000004	8
GATCGCT	40	6.8193913E-9	45.000004	9
ACGTTCG	20	7.034454E-4	45.000004	2
ACGTTAT	20	7.034454E-4	45.000004	40
GCGAACA	20	7.034454E-4	45.000004	22
ACACCCG	20	7.034454E-4	45.000004	1
CATCTCG	40	6.8193913E-9	45.000004	20
TAACGCA	40	6.8193913E-9	45.000004	28
CCTCGGG	40	6.8193913E-9	45.000004	3
TCTAGCG	20	7.034454E-4	45.000004	1
GTAATCG	20	7.034454E-4	45.000004	1
CCCGTCG	20	7.034454E-4	45.000004	37
CGCTAAT	40	6.8193913E-9	45.000004	25
GTCGTAA	20	7.034454E-4	45.000004	38
CTCGCTA	40	6.8193913E-9	45.000004	23