SRR3548954_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548954_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2034344
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5893	0.2896756890673357	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3328	0.16359081846531362	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3131	0.15390710715591857	No Hit
GATAGCGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAAGGCA	2364	0.11620453571274082	No Hit
TATACAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	2178	0.10706153924803277	No Hit
TTTTGAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	2126	0.10450543270951226	No Hit
TTGTTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	2105	0.10347315891510973	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTAGACG	115	0.0	45.000004	1
CCTTAAG	20	7.0345675E-4	45.000004	33
GGTACCG	115	0.0	45.000004	1
GCGACAG	45	3.8562575E-10	45.000004	1
GTCGATC	20	7.0345675E-4	45.000004	1
CGTATAA	35	1.2125383E-7	45.000004	26
TTAGCGA	80	0.0	45.000004	1
CGTGATG	40	6.8193913E-9	45.000004	42
CGTGAGA	20	7.0345675E-4	45.000004	20
CTATACG	35	1.2125383E-7	45.000004	1
CGCATGA	90	0.0	45.000004	41
GACAACG	35	1.2125383E-7	45.000004	41
GATCCGG	40	6.8193913E-9	45.000004	2
TTCACGC	20	7.0345675E-4	45.000004	19
ATTCGTG	25	3.891868E-5	45.000004	1
TTCGTGA	80	0.0	45.000004	1
CGTCTGG	80	0.0	45.000004	2
AAGCGTG	20	7.0345675E-4	45.000004	34
ACCCTTG	25	3.891868E-5	45.000004	25
CGACAAG	35	1.2125383E-7	45.000004	24