SRR3548952_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548952_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2191290
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9250	0.42212577979181215	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	2448	0.11171501718166012	No Hit
GTAATAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	2348	0.10715149523796484	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2193	0.1000780362252372	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTACCGG	55	1.8189894E-12	45.000004	2
TACCCGA	60	0.0	45.000004	22
TAGGTAC	20	7.034687E-4	45.000004	14
ACTCTCG	40	6.8193913E-9	45.000004	1
TAGCCGT	20	7.034687E-4	45.000004	44
CGTTACA	20	7.034687E-4	45.000004	20
ATATCGC	30	2.1664073E-6	45.000004	22
CGAGGTG	60	0.0	45.000004	4
TACGACT	40	6.8193913E-9	45.000004	17
TATTCGA	40	6.8193913E-9	45.000004	28
GACGGGT	40	6.8193913E-9	45.000004	4
GACGGAT	20	7.034687E-4	45.000004	39
GTATACG	55	1.8189894E-12	45.000004	1
CGGTCTA	155	0.0	45.000004	31
CCGCGTA	20	7.034687E-4	45.000004	12
ACGTAGC	20	7.034687E-4	45.000004	23
TAGGCCG	55	1.8189894E-12	45.000004	1
CACACGG	70	0.0	45.000004	2
ACTCCGA	35	1.2126111E-7	45.000004	31
TATACGA	40	6.8193913E-9	45.000004	15