SRR3548950_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548950_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1559603
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5164	0.33110990425127423	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2918	0.18709889632169213	No Hit
TTTGTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	2158	0.1383685463544248	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1946	0.12477534346881866	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1633	0.10470613354808884	No Hit
GATAGAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	1570	0.10066664401132852	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGACGC	65	0.0	45.000004	1
TAAACGG	65	0.0	45.000004	2
AGTTCCC	65	0.0	45.000004	17
TTGTTCG	115	0.0	45.000004	1
TGATCCG	35	1.2123019E-7	45.0	1
TCACGAC	70	0.0	45.0	25
CGGGTTC	20	7.034063E-4	45.0	6
TATCACT	20	7.034063E-4	45.0	45
TGTCACG	55	1.8189894E-12	45.0	2
ACTATCC	40	6.8175723E-9	45.0	44
CTCACGA	70	0.0	45.0	24
ACACGGC	25	3.8914488E-5	45.0	3
GCGACTT	25	3.8914488E-5	45.0	41
GTCGATA	50	2.1827873E-11	45.0	9
CAACGCG	20	7.034063E-4	45.0	40
TTAGCGT	55	1.8189894E-12	45.0	30
TTAGCGA	25	3.8914488E-5	45.0	31
CGTTGGC	25	3.8914488E-5	45.0	15
TGAACCG	40	6.8175723E-9	45.0	1
AGGCGTA	20	7.034063E-4	45.0	12