SRR3548948_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548948_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1643167
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4838	0.29443142419486273	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2568	0.15628356703852986	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2259	0.13747841820094975	No Hit
GGTTATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	2068	0.12585452361202484	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2046	0.1245156457012586	No Hit
GTAGATGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAAT	1881	0.11447406137051194	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1818	0.11064000189877231	No Hit
GTATAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	1649	0.1003549852206136	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGATCGA	40	6.8175723E-9	45.000004	35
ACGCGAG	30	2.1660726E-6	45.000004	1
AGTTTCG	30	2.1660726E-6	45.000004	1
CGAAATT	40	6.8175723E-9	45.000004	37
GTACAAT	20	7.034172E-4	45.000004	13
CCCTAGA	20	7.034172E-4	45.000004	44
TAGACCG	40	6.8175723E-9	45.000004	1
GGCACGA	40	6.8175723E-9	45.000004	33
ACACCGT	30	2.1660726E-6	45.000004	35
GGCGTTA	35	1.2123564E-7	45.000004	20
CGACCTT	20	7.034172E-4	45.000004	23
ATTCGGT	30	2.1660726E-6	45.000004	30
TACGGTG	35	1.2123564E-7	45.000004	4
ACCTCGT	30	2.1660726E-6	45.000004	37
CGTTATC	35	1.2123564E-7	45.000004	22
CCGTATG	60	0.0	45.000004	1
CCCGTAC	30	2.1660726E-6	45.000004	4
CCGTAGA	20	7.034172E-4	45.000004	33
TACGCGG	20	7.034172E-4	45.000004	2
CCGTAAG	80	0.0	45.000004	1