SRR3548941_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548941_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2091997
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6369	0.30444594327812136	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	2967	0.14182620720775413	No Hit
GGCATTGGTATCTTTTCCCCACTTCCAAGCATTTTTTCAACTAATCTTATG	2744	0.1311665360896789	No Hit
TAATTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	2596	0.12409195615481283	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2574	0.12304032940773815	No Hit
AATATAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	2452	0.11720858108305128	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2413	0.1153443336677825	No Hit
TAGTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	2373	0.11343228503673762	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2331	0.11142463397414051	No Hit
TGGATTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	2254	0.10774394035937909	No Hit
TTTTGAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	2176	0.10401544552884158	No Hit
TGATTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	2106	0.10066936042451304	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGATCCA	25	3.891906E-5	45.000004	24
TCACGAG	65	0.0	45.000004	1
TCGCCTA	165	0.0	45.000004	43
CAGGTAC	50	2.1827873E-11	45.000004	20
GTGCAAC	50	2.1827873E-11	45.000004	20
TCGTTGC	65	0.0	45.000004	24
AATCCGA	65	0.0	45.000004	30
ATCTCGG	75	0.0	45.000004	2
ATCTCGA	75	0.0	45.000004	12
GGTACCC	50	2.1827873E-11	45.000004	8
ATGATCC	25	3.891906E-5	45.000004	17
CAACGCT	25	3.891906E-5	45.000004	18
TTAGCGA	25	3.891906E-5	45.000004	27
TCCGACA	25	3.891906E-5	45.000004	18
CGTGATA	25	3.891906E-5	45.000004	42
TTGTACG	95	0.0	45.000004	1
GCGTTAG	165	0.0	45.000004	1
ATCCGCG	50	2.1827873E-11	45.000004	1
ATCCGAT	65	0.0	45.000004	31
TCCAGCG	25	3.891906E-5	45.000004	12