SRR3548939_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548939_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1762321
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7146	0.4054879899859333	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	3140	0.17817412378335162	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2119	0.12023916187800066	No Hit
TAGTATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	1926	0.10928769503399212	No Hit
GTAATAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	1873	0.106280297403254	No Hit
TATTAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	1831	0.10389707663927288	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTTC	55	1.8189894E-12	45.000004	6
GCGACGG	110	0.0	45.000004	2
ACGCCAA	20	7.0343114E-4	45.000004	44
ACGCATC	20	7.0343114E-4	45.000004	20
GCGAACC	20	7.0343114E-4	45.000004	27
CCTCGAC	20	7.0343114E-4	45.000004	22
ATCGTAG	20	7.0343114E-4	45.000004	1
CGGATCA	40	6.8193913E-9	45.000004	31
TATAGCG	85	0.0	45.000004	1
CGGTCTA	55	1.8189894E-12	45.000004	31
ACGTAAG	40	6.8193913E-9	45.000004	1
GCGGAAC	40	6.8193913E-9	45.000004	21
ACATCGC	20	7.0343114E-4	45.000004	41
CTCTCGA	20	7.0343114E-4	45.000004	16
CGTTTCA	20	7.0343114E-4	45.000004	44
GTAACGT	55	1.8189894E-12	45.000004	9
ATCGATC	20	7.0343114E-4	45.000004	29
CCTTCGT	35	1.2124292E-7	45.0	7
AGTTTCG	25	3.8916558E-5	45.0	36
CAACGGA	25	3.8916558E-5	45.0	22