SRR3548936_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548936_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1983434
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11789	0.5943731931589356	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	3833	0.19325069551091695	No Hit
GAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	3075	0.1550341478466135	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2926	0.14752192409729792	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2462	0.1241281534954024	No Hit
AAGTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	2025	0.10209565833801378	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1989	0.10028062441200464	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTGGCT	20	7.0345256E-4	45.0	19
AAGTACG	75	0.0	45.0	1
GATCGCT	40	6.8193913E-9	45.0	10
ACGTTAT	20	7.0345256E-4	45.0	33
ACGTTAG	45	3.8562575E-10	45.0	1
ATTACCG	35	1.2125201E-7	45.0	13
TCGGGCA	20	7.0345256E-4	45.0	1
TACGATA	25	3.8918333E-5	45.0	34
CTACGAT	20	7.0345256E-4	45.0	33
GCGATAA	160	0.0	45.0	9
GCTAGAT	25	3.8918333E-5	45.0	23
TAGGCGT	20	7.0345256E-4	45.0	15
CGGTATA	25	3.8918333E-5	45.0	41
AGTAGCG	155	0.0	45.0	1
TACAGCC	20	7.0345256E-4	45.0	43
AAAATCG	55	1.8189894E-12	45.0	27
CCGTTTA	20	7.0345256E-4	45.0	18
GTACGTG	55	1.8189894E-12	45.0	1
TACGTAG	25	3.8918333E-5	45.0	1
GTTGCGA	20	7.0345256E-4	45.0	16