SRR3548935_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548935_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2066473
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10202	0.4936914249544998	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2731	0.1321575457313016	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2641	0.12780229889284786	No Hit
GGATTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	2426	0.11739809811209727	No Hit
AGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA	2327	0.11260732658979818	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	2299	0.11125236090672368	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATCATC	30	2.1663454E-6	45.000004	27
TACCCGT	60	0.0	45.000004	38
ACGCATG	20	7.0345943E-4	45.000004	1
GCACGAG	85	0.0	45.000004	1
GTTAGCG	20	7.0345943E-4	45.000004	1
CTAAGCG	40	6.8193913E-9	45.000004	1
TCTCGTC	20	7.0345943E-4	45.000004	33
GAACGAT	20	7.0345943E-4	45.000004	9
CGTAATT	40	6.8193913E-9	45.000004	30
ATAACCG	20	7.0345943E-4	45.000004	37
TCATACG	35	1.2125565E-7	45.000004	10
CGCGTCA	20	7.0345943E-4	45.000004	39
CCAAACG	30	2.1663454E-6	45.000004	27
CGATAGC	20	7.0345943E-4	45.000004	10
TATTGCG	45	3.8562575E-10	45.0	1
TGCGCAC	50	2.1827873E-11	45.0	12
CGGATGG	45	3.8562575E-10	45.0	17
GTATACG	45	3.8562575E-10	45.0	1
CACACGG	50	2.1827873E-11	45.0	2
ATTGCGA	25	3.8918897E-5	45.0	10