SRR3548931_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548931_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2584159
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12694	0.4912236437463794	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	11984	0.4637485541717828	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	9314	0.36042673844759554	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	7655	0.2962279023852635	No Hit
AGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA	3664	0.1417869411286225	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	3402	0.13164824610250375	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2952	0.1142344569355059	No Hit
AGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA	2783	0.10769461167056671	No Hit
GAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	2748	0.10634020584646689	No Hit
GAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2664	0.10308963186862728	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCCTA	25	3.8921615E-5	45.000004	36
TATGCGA	50	2.1827873E-11	45.000004	1
CGTTACC	25	3.8921615E-5	45.000004	44
CGCACAC	25	3.8921615E-5	45.000004	21
TAATGCG	65	0.0	45.000004	1
GTACGCG	100	0.0	45.000004	1
CGGCGTA	35	1.2127202E-7	45.0	21
CTCGTTA	40	6.8212103E-9	45.0	11
CTCCGTA	20	7.034924E-4	45.0	22
GATCACG	45	3.8562575E-10	45.0	1
TAAGTCG	35	1.2127202E-7	45.0	1
CACTACG	20	7.034924E-4	45.0	1
CGGTCTA	140	0.0	45.0	31
CGCGTCA	20	7.034924E-4	45.0	39
CGTCATT	20	7.034924E-4	45.0	23
TGTAACG	70	0.0	45.0	1
GCGTACA	35	1.2127202E-7	45.0	44
ACGTTAG	120	0.0	44.999996	1
TTAGCCG	30	2.1665583E-6	44.999996	24
TGAGTCG	30	2.1665583E-6	44.999996	16