SRR3548927_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548927_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3839863
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	65047	1.6939927283864034	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	6433	0.16753201872045956	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4496	0.11708751067420896	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	4233	0.11023830798130038	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCCCG	25	3.892518E-5	45.0	12
ACCGGTC	20	7.035353E-4	45.0	20
CGTACTA	20	7.035353E-4	45.0	35
GTTCACG	90	0.0	45.0	1
GCTCGAC	20	7.035353E-4	45.0	20
CGTTTTT	29675	0.0	43.89301	1
AATGTCG	105	0.0	42.857147	1
ACGGGTA	405	0.0	42.77778	5
CATCGGC	90	0.0	42.5	4
TATCGTG	150	0.0	42.0	1
CGGTCTA	290	0.0	41.896553	31
CGAACGG	215	0.0	41.860466	2
GCGTAAG	345	0.0	41.739132	1
ACTACCG	60	3.6379788E-12	41.250004	1
CGACGGT	295	0.0	41.186436	28
ATTAGCG	210	0.0	40.714287	1
CGGGTAC	155	0.0	40.64516	6
ATACGTG	95	0.0	40.263157	1
CTCGATT	45	1.9303116E-8	40.0	24
TCGTACA	170	0.0	39.705883	34