SRR3548922_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548922_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	929047
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3206	0.34508480195296903	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2206	0.23744762105684641	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1233	0.13271664404491915	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1140	0.12270638622157976	No Hit
GAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	1044	0.11237321685555197	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1003	0.10796009243881094	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTGCACC	25	3.890226E-5	45.0	38
AACGTCC	35	1.2115925E-7	45.0	33
CGTGGCG	25	3.890226E-5	45.0	27
AACCGGG	20	7.032588E-4	45.0	3
CAGCGCG	20	7.032588E-4	45.0	1
AATCCGG	45	3.8380676E-10	45.0	2
TTGGCCA	35	1.2115925E-7	45.0	36
ACACGTT	20	7.032588E-4	45.0	45
ACACGTG	20	7.032588E-4	45.0	16
AGATCGT	40	6.8121153E-9	45.0	19
CGAACAG	20	7.032588E-4	45.0	9
AGTTTCG	25	3.890226E-5	45.0	1
CTCGTAG	20	7.032588E-4	45.0	1
GATCGAG	25	3.890226E-5	45.0	1
TAGACTC	25	3.890226E-5	45.0	5
CCCTATA	35	1.2115925E-7	45.0	32
ACGTTAG	55	1.8189894E-12	45.0	1
GCGAACA	20	7.032588E-4	45.0	8
CATTGCG	20	7.032588E-4	45.0	1
GATCCCC	20	7.032588E-4	45.0	9