SRR3548918_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548918_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3592801
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	11360	0.3161878434124239	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11055	0.3076986451517911	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	8753	0.24362607336170303	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	8560	0.23825422003612226	No Hit
ATTGATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	3970	0.11049874457282771	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3917	0.109023572416062	No Hit
GGATATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	3881	0.10802156868693813	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3790	0.10548872592720832	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAC	45	3.8562575E-10	45.000004	25
TCGCCTC	20	7.0352905E-4	45.000004	19
GTGCACC	25	3.892467E-5	45.000004	18
CAGGTAC	25	3.892467E-5	45.000004	10
ACACGGC	25	3.892467E-5	45.000004	15
ATTAGCC	50	2.1827873E-11	45.000004	29
CACGGGT	90	0.0	45.000004	4
CGTGCGC	25	3.892467E-5	45.000004	18
GACACGT	20	7.0352905E-4	45.000004	8
ATAATCG	160	0.0	45.000004	1
GGCGTGT	80	0.0	45.000004	7
GACGTAA	80	0.0	45.000004	11
CGCATCA	20	7.0352905E-4	45.000004	33
CGCATAT	85	0.0	45.000004	35
CCGGATG	40	6.8212103E-9	45.000004	1
ATAGCCG	45	3.8562575E-10	45.000004	2
CGACACT	20	7.0352905E-4	45.000004	8
TCCAGCG	35	1.2129021E-7	45.000004	6
CGCTCAC	45	3.8562575E-10	45.000004	5
GTGCTAT	25	3.892467E-5	45.000004	23