SRR3548917_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548917_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	286937
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1527	0.5321725674973949	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1048	0.3652369683937589	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	692	0.2411679218783217	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	618	0.2153782886138769	No Hit
GAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	513	0.1787848900629755	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	500	0.17425427881381628	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	399	0.13905491449342539	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	312	0.10873466997982137	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CATGAGG	35	1.2076634E-7	45.000004	2
GCGTTAG	25	3.883464E-5	45.000004	1
AGTATCG	25	3.883464E-5	45.000004	1
TGTTACG	25	3.883464E-5	45.000004	1
GCGATTC	35	1.2076634E-7	45.000004	9
TATCGGA	25	3.883464E-5	45.000004	35
GTACGAG	35	1.2076634E-7	45.000004	1
AGGTCAA	20	7.024429E-4	45.0	33
GCCCCGT	20	7.024429E-4	45.0	6
AGCGTGG	20	7.024429E-4	45.0	2
AAATCGA	20	7.024429E-4	45.0	44
GTCTGAT	20	7.024429E-4	45.0	33
GCGAAAG	20	7.024429E-4	45.0	1
AGCCCCG	20	7.024429E-4	45.0	5
GGCACCG	45	3.8198777E-10	45.0	8
GTTTACG	20	7.024429E-4	45.0	1
CAGCACA	95	0.0	45.0	45
CGGCAGG	20	7.024429E-4	45.0	2
ATAGCGG	45	3.8198777E-10	45.0	2
ATTGTGT	20	7.024429E-4	45.0	21