SRR3548914_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548914_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2898530
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15623	0.5389973538310799	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	10584	0.3651506108268674	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	4706	0.16235816086085014	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	3801	0.13113543761837898	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	2911	0.10043021807605923	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATAGCG	140	0.0	45.000004	1
ATCGATC	55	1.8189894E-12	45.000004	13
CAACGTC	25	3.8922815E-5	45.0	34
TATATCG	20	7.0350664E-4	45.0	33
ACTACGT	20	7.0350664E-4	45.0	27
CTCGAAT	25	3.8922815E-5	45.0	21
CAATCGT	40	6.8212103E-9	45.0	41
TTACGTA	30	2.166651E-6	44.999996	24
TCGAATC	30	2.166651E-6	44.999996	35
TCGACAC	185	0.0	43.783783	34
CGCATCG	235	0.0	43.085106	21
ATAGCGG	460	0.0	43.04348	2
CTATGCG	105	0.0	42.85714	1
CGTTTTT	15725	0.0	42.53895	1
CGACGGT	420	0.0	42.321426	28
CGGGTAT	240	0.0	42.187496	6
TCGAGAG	200	0.0	41.625	1
GCATATC	555	0.0	40.945946	28
GACCGTT	150	0.0	40.5	43
CGTAATC	50	1.0822987E-9	40.5	43