##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548912_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2205335 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.90028181659476 31.0 31.0 33.0 28.0 34.0 2 31.180711773948175 31.0 31.0 34.0 28.0 34.0 3 31.257463378579672 31.0 31.0 34.0 28.0 34.0 4 35.10950354481292 35.0 35.0 37.0 32.0 37.0 5 34.98374850079466 35.0 35.0 37.0 32.0 37.0 6 35.04588418539587 37.0 35.0 37.0 32.0 37.0 7 35.53465165156314 37.0 35.0 37.0 35.0 37.0 8 35.439858343516974 37.0 35.0 37.0 35.0 37.0 9 37.0801569829527 39.0 37.0 39.0 33.0 39.0 10 36.51258289556915 38.0 35.0 39.0 32.0 39.0 11 36.26870747528153 38.0 35.0 39.0 32.0 39.0 12 35.69029467178456 37.0 35.0 39.0 30.0 39.0 13 35.300607390713886 37.0 35.0 39.0 30.0 39.0 14 36.341680062212774 38.0 35.0 40.0 30.0 41.0 15 36.62024272956263 38.0 35.0 40.0 31.0 41.0 16 36.6562785245779 38.0 35.0 40.0 31.0 41.0 17 36.54433408076324 38.0 35.0 40.0 31.0 41.0 18 36.460832934678855 38.0 35.0 40.0 31.0 41.0 19 36.366657673324006 38.0 35.0 40.0 30.0 41.0 20 36.187371079677234 37.0 34.0 40.0 30.0 41.0 21 36.05163977354914 37.0 34.0 40.0 30.0 41.0 22 35.9216282333523 37.0 34.0 40.0 30.0 41.0 23 35.85488735271512 37.0 34.0 40.0 30.0 41.0 24 35.757056864376615 37.0 34.0 40.0 30.0 41.0 25 35.640870888096366 37.0 34.0 40.0 29.0 41.0 26 35.498077162880016 37.0 34.0 40.0 29.0 41.0 27 35.37953054751319 37.0 34.0 40.0 29.0 41.0 28 35.356441084914536 37.0 34.0 40.0 28.0 41.0 29 35.35821677885673 37.0 34.0 40.0 29.0 41.0 30 35.24530286781827 37.0 34.0 40.0 28.0 41.0 31 35.08412599446343 37.0 34.0 40.0 27.0 41.0 32 34.83282630530056 37.0 34.0 40.0 25.0 41.0 33 34.553843747095115 36.0 33.0 40.0 24.0 41.0 34 34.3410615620756 36.0 33.0 40.0 23.0 41.0 35 34.13584285380679 36.0 33.0 40.0 23.0 41.0 36 33.96622689976806 36.0 33.0 40.0 22.0 41.0 37 33.901091670879936 36.0 33.0 40.0 22.0 41.0 38 33.84063192213428 36.0 33.0 40.0 23.0 41.0 39 33.77346888341227 36.0 33.0 40.0 22.0 41.0 40 33.64103186137253 36.0 32.0 40.0 21.0 41.0 41 33.578011050475325 36.0 32.0 40.0 21.0 41.0 42 33.51345759261065 36.0 32.0 40.0 21.0 41.0 43 33.428373467069626 35.0 32.0 40.0 21.0 41.0 44 33.359118229203276 35.0 32.0 40.0 21.0 41.0 45 33.30258577495029 35.0 32.0 40.0 20.0 41.0 46 33.227889640349424 35.0 32.0 39.0 20.0 41.0 47 33.126741288738444 35.0 32.0 39.0 20.0 41.0 48 33.08888037418352 35.0 32.0 39.0 20.0 41.0 49 33.10321153022103 35.0 32.0 39.0 20.0 41.0 50 33.0360144830604 35.0 32.0 39.0 20.0 41.0 51 32.859612711900915 35.0 31.0 39.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 3.0 11 1.0 12 11.0 13 8.0 14 27.0 15 97.0 16 306.0 17 791.0 18 1769.0 19 3438.0 20 5924.0 21 9248.0 22 13843.0 23 20118.0 24 27990.0 25 37829.0 26 48388.0 27 54450.0 28 58195.0 29 63601.0 30 73384.0 31 86151.0 32 105404.0 33 131676.0 34 200019.0 35 254114.0 36 173894.0 37 207594.0 38 273005.0 39 353884.0 40 172.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.20982979910082 23.120523639265688 26.390729753076066 17.27891680855743 2 34.394865179213134 25.778351134861598 27.351400127418284 12.475383558506985 3 29.986147229332506 24.66867845474724 32.61744814279916 12.72772617312109 4 27.288643222004822 26.838280805410513 31.74229765545824 14.130778317126422 5 23.343120206227173 31.406521004745308 31.081763088147607 14.168595700879912 6 20.273881292411357 40.71404117741749 28.818478825212495 10.193598704958658 7 81.85395869561766 5.425842332344065 10.624462950073346 2.0957360219649166 8 82.69927244613629 5.068663037588394 10.16806970369581 2.0639948125794945 9 76.6413719457588 6.881584883929199 12.321801449666376 4.155241720645616 10 42.877884765806556 25.60604171248359 18.695980429277185 12.82009309243267 11 38.0336320785731 23.095130671757353 24.122321552054448 14.7489156976151 12 34.59941460140976 21.642788964034942 28.597650697059628 15.160145737495665 13 22.799257255700383 32.61409264352128 28.012206762237934 16.574443338540405 14 17.3413109572922 35.9959824697835 30.171379858388864 16.491326714535433 15 17.238242715959252 23.04629455388864 42.44266744054758 17.272795289604527 16 18.46803320130502 20.324984639521887 41.2268430873314 19.980139071841695 17 18.40323578957392 21.135065647622696 31.208591891934784 29.2531066708686 18 21.409400385882417 23.927430526427955 33.92863215792612 20.734536929763507 19 27.699873261885383 24.09008155223583 27.770293402136183 20.439751783742608 20 28.770549599040507 22.754139393788243 28.414594608075415 20.060716399095828 21 23.226312555688818 26.793933801440595 30.02695735568519 19.952796287185393 22 22.611439985308355 24.062058598806985 29.040485912571107 24.286015503313553 23 21.35485085032433 27.682052840044708 27.516590449976984 23.446505859653975 24 20.198019801980198 24.23337044031859 36.84029863943573 18.728311118265477 25 19.85503336227829 24.71116633073887 34.2322594979901 21.20154080899274 26 18.426542906179787 29.877138847385996 29.546350101005064 22.149968145429153 27 19.62073789242904 29.38877766869886 30.234000730047818 20.756483708824284 28 18.30778543849347 27.85014521603294 35.39675378117157 18.44531556430202 29 18.863936771510904 24.922834852754796 35.371406158248064 20.841822217486232 30 19.77123656950078 28.47717013514954 32.456474866630245 19.295118428719444 31 26.442830681052993 26.70564789476429 27.15873098644877 19.69279043773395 32 26.93291495396391 26.22381633629358 28.42588540969966 18.41738330004285 33 25.708293751289485 27.200992139516217 26.744553548553846 20.34616056064045 34 20.089600899636565 28.653243158068953 28.9228620595057 22.334293882788785 35 22.099681000845678 25.208687115562945 30.581158871554663 22.110473012036717 36 26.325206827987586 28.05501205032342 26.390911131415407 19.228869990273587 37 21.187801399787336 31.809135573506975 27.921517592565305 19.08154543414039 38 21.643151720713632 31.47163582857026 25.484608914291933 21.40060353642417 39 21.90619565734911 30.23699347264701 26.839913210464623 21.016897659539254 40 23.179789011646758 27.460000408101266 27.362237483194164 21.997973097057816 41 19.306318541174015 26.703244631767966 28.241605016924865 25.748831810133154 42 21.47038885248726 28.064806480648063 25.606359124577445 24.858445542287228 43 22.49807852321756 27.21786032507533 26.542407389353546 23.741653762353565 44 20.784506662253126 29.376534630793056 27.824752248524597 22.014206458429218 45 19.500529398027965 33.16761399061821 25.744478729988867 21.587377881364965 46 21.670449160785097 31.41540854337323 26.938900439162307 19.97524185667937 47 22.230364094343944 28.78841536546602 27.466892784996382 21.514327755193655 48 21.875860130093614 26.84635214151138 29.770216316341962 21.507571412053046 49 21.23817923354048 27.017210537174623 30.91444157010159 20.830168659183297 50 20.013603375450895 30.057927707128396 29.016634660947204 20.911834256473504 51 19.79853400957224 30.85086846216108 27.186073771105068 22.16452375716161 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1817.0 1 3027.5 2 4238.0 3 20093.0 4 35948.0 5 26116.5 6 16285.0 7 16268.0 8 16251.0 9 16282.0 10 16313.0 11 16337.5 12 16362.0 13 15649.0 14 14936.0 15 13990.0 16 13044.0 17 12183.0 18 11322.0 19 11108.5 20 10895.0 21 10874.5 22 10854.0 23 10928.0 24 11002.0 25 13213.0 26 18332.5 27 21241.0 28 26383.5 29 31526.0 30 37873.0 31 44220.0 32 46780.5 33 49341.0 34 53995.0 35 58649.0 36 61728.5 37 64808.0 38 70867.0 39 76926.0 40 103330.5 41 129735.0 42 147972.0 43 166209.0 44 173422.5 45 180636.0 46 175995.0 47 171354.0 48 164498.5 49 157643.0 50 153818.5 51 149994.0 52 139161.5 53 128329.0 54 120835.5 55 113342.0 56 112579.0 57 111816.0 58 106802.5 59 101789.0 60 91924.5 61 82060.0 62 71266.5 63 60473.0 64 50018.5 65 39564.0 66 32558.0 67 25552.0 68 20714.0 69 15876.0 70 13877.5 71 11879.0 72 9913.5 73 7948.0 74 6489.5 75 3702.5 76 2374.0 77 1779.0 78 1184.0 79 947.0 80 710.0 81 464.5 82 219.0 83 175.0 84 131.0 85 93.0 86 55.0 87 32.5 88 10.0 89 10.0 90 10.0 91 7.5 92 5.0 93 4.5 94 4.0 95 2.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2205335.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.967126156326916 #Duplication Level Percentage of deduplicated Percentage of total 1 78.4930617688515 15.672808667350191 2 5.991890971166219 2.3928168587246423 3 2.4238170574592393 1.4518998289843716 4 1.463807634456 1.1691212682310972 5 1.0343404452738718 1.0326403079687378 6 0.7728861706201272 0.9259389403951493 7 0.618230243362203 0.8640996884008859 8 0.5211056969470926 0.8323986553378608 9 0.4606054006188785 0.8277269528198381 >10 5.726910749272348 26.502961064402307 >50 1.7617383570153313 25.149208610005715 >100 0.7212979772168105 19.992505408717573 >500 0.006413572816256979 0.8866825686253178 >1k 0.0036648987521468446 1.3934367265852148 >5k 0.0 0.0 >10k+ 2.2905617200917779E-4 0.9057544534510649 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 19804 0.8980041580984295 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 3702 0.16786565306404697 No Hit AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 3686 0.16714013970666589 No Hit AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 3080 0.13966132129585754 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 3058 0.13866374042945856 No Hit TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC 2350 0.10655977436534586 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 2264 0.10266014006942256 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.00934098447628138 0.0 2 0.0 0.0 0.0 0.0367744583022534 0.0 3 9.068916967263477E-5 0.0 0.0 0.05604590685768829 0.0 4 9.068916967263477E-5 0.0 0.0 0.07831009801232013 0.0 5 1.3603375450895215E-4 0.0 0.0 0.1416111384438192 0.0 6 1.3603375450895215E-4 0.0 0.0 0.2266775795967506 0.0 7 1.3603375450895215E-4 0.0 0.0 0.29233653843973817 0.0 8 1.3603375450895215E-4 0.0 0.0 0.45893254312836823 0.0 9 1.8137833934526955E-4 0.0 0.0 0.5476718956530414 0.0 10 1.8137833934526955E-4 0.0 0.0 0.6936814588259833 0.0 11 1.8137833934526955E-4 0.0 0.0 0.774077407740774 0.0 12 1.8137833934526955E-4 0.0 0.0 0.8707067180269664 0.0 13 2.2672292418158692E-4 0.0 0.0 0.9097030609861994 0.0 14 2.2672292418158692E-4 0.0 0.0 0.927070036978509 0.0 15 2.2672292418158692E-4 0.0 0.0 0.9507852548479029 0.0 16 2.2672292418158692E-4 0.0 0.0 0.9912779691067344 0.0 17 2.2672292418158692E-4 0.0 0.0 1.036667898527888 0.0 18 2.2672292418158692E-4 0.0 0.0 1.1206007250599115 0.0 19 2.2672292418158692E-4 0.0 0.0 1.1561508795715845 0.0 20 2.2672292418158692E-4 0.0 0.0 1.1943310200037636 0.0 21 2.2672292418158692E-4 0.0 0.0 1.2367282068257204 0.0 22 2.2672292418158692E-4 0.0 0.0 1.2806671095321118 0.0 23 2.2672292418158692E-4 0.0 0.0 1.3295032274008258 0.0 24 2.2672292418158692E-4 0.0 0.0 1.3715830021289284 0.0 25 2.2672292418158692E-4 0.0 0.0 1.4055914407561663 0.0 26 2.2672292418158692E-4 0.0 0.0 1.4386476431018416 0.0 27 2.2672292418158692E-4 0.0 0.0 1.4752407230647497 0.0 28 2.2672292418158692E-4 0.0 0.0 1.5159148156629265 0.0 29 2.2672292418158692E-4 0.0 0.0 1.5598990629541543 0.0 30 2.2672292418158692E-4 0.0 0.0 1.6180761652991495 0.0 31 2.2672292418158692E-4 0.0 0.0 1.6657786685469556 0.0 32 2.2672292418158692E-4 0.0 0.0 1.7150228876791962 0.0 33 2.2672292418158692E-4 0.0 0.0 1.7668517481471069 0.0 34 2.2672292418158692E-4 0.0 0.0 1.8165494131277107 0.0 35 2.2672292418158692E-4 0.0 0.0 1.879442352295683 0.0 36 2.2672292418158692E-4 0.0 0.0 1.9329489624025376 0.0 37 2.2672292418158692E-4 0.0 0.0 1.987317119621282 0.0 38 2.2672292418158692E-4 0.0 0.0 2.047580072868748 0.0 39 2.2672292418158692E-4 0.0 0.0 2.1063919994014513 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGTCTA 645 0.0 43.604652 31 CGTTTTT 13840 0.0 42.902817 1 GCGTAAG 175 0.0 42.42857 1 TAATACG 75 0.0 42.0 1 TCACGAC 685 0.0 41.386864 25 CGACGGT 680 0.0 41.360294 28 CACGACG 710 0.0 40.880283 26 CTCACGA 695 0.0 40.791367 24 ACGGGTA 305 0.0 40.57377 5 ATTGGGC 555 0.0 40.135136 4 CATATGC 1250 0.0 39.96 33 ACGGTCT 705 0.0 39.893616 30 TATAGCG 140 0.0 38.57143 1 ATACCGG 105 0.0 38.57143 2 ACGACGG 735 0.0 38.57143 27 AGGGCGA 1610 0.0 38.152176 6 CGGGTAC 195 0.0 38.076927 6 GGTACCT 1395 0.0 38.064518 8 CGCATCG 125 0.0 37.800003 21 ATAGGGC 880 0.0 37.585228 4 >>END_MODULE