SRR3548911_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548911_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2735597
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13444	0.4914466567992289	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	7722	0.28227842039598666	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2928	0.10703330936537801	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGACA	30	2.1666056E-6	45.000004	25
TACGATC	25	3.892222E-5	45.000004	12
AACGCGT	25	3.892222E-5	45.000004	11
TTACGCG	30	2.1666056E-6	45.000004	1
ACGTATA	30	2.1666056E-6	45.000004	26
CGACATA	40	6.8212103E-9	45.0	17
CCGACGT	20	7.034997E-4	45.0	11
CGTGTAA	20	7.034997E-4	45.0	16
CGTAACA	35	1.2127566E-7	45.0	35
TCGGTAA	45	3.8562575E-10	45.0	19
GCGTAAG	135	0.0	45.0	1
TCTAGCG	145	0.0	43.44828	1
CGTTTTT	13930	0.0	42.94867	1
ACGGTCT	325	0.0	42.923073	30
CGGTCTA	330	0.0	42.272728	31
ATACCGG	160	0.0	42.1875	2
ATAACGG	230	0.0	42.065216	2
CCCGTCA	70	0.0	41.785713	45
ACGGGTA	345	0.0	41.739132	5
CGGCATA	50	1.0822987E-9	40.500004	45