SRR3548910_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548910_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2446472
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12799	0.5231615158481274	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	7191	0.29393346827595	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGATT	60	0.0	45.000004	23
GGTATCG	60	0.0	45.000004	1
CACGTCA	45	3.8562575E-10	45.000004	33
TACACCG	30	2.166511E-6	45.000004	35
GTACGAC	30	2.166511E-6	45.000004	38
ACGCGAT	55	1.8189894E-12	45.0	22
GCGCCTA	20	7.0348504E-4	45.0	40
TGCTCGA	20	7.0348504E-4	45.0	35
CCGTCGA	460	0.0	44.510868	41
TCCGTCG	110	0.0	42.954544	40
CGTTTTT	13405	0.0	42.93547	1
ACGTTAG	95	0.0	42.63158	1
CGATGAA	3450	0.0	42.586956	19
CCCGTCG	505	0.0	42.32673	40
GATGAAT	3605	0.0	42.316227	20
TAGTAGG	1285	0.0	41.498055	2
CGTCGAA	545	0.0	41.284405	42
GACACGA	315	0.0	40.714283	25
GTCGAAT	540	0.0	40.416668	43
CGTTAGG	340	0.0	40.367645	2