SRR3548908_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548908_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4516102
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	36575	0.8098798477093742	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	10170	0.22519420509102764	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	6063	0.13425294645692237	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	4888	0.10823493357767384	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4534	0.10039631522937259	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	27485	0.0	43.16627	1
CGCATCG	335	0.0	42.985077	21
CGACGGT	840	0.0	42.857143	28
TAATGCG	275	0.0	42.545456	1
GCGTAAG	455	0.0	41.53846	1
CGTAAGG	765	0.0	41.47059	2
TAGCCGT	475	0.0	40.263157	44
CGTATGA	185	0.0	40.135136	15
CGGTCTA	910	0.0	39.80769	31
TAGCATA	4400	0.0	39.528408	30
CGTCGAA	40	3.4612276E-7	39.375	14
TATAGCG	260	0.0	38.94231	1
GTTGATC	4630	0.0	38.633907	16
CATATGC	4505	0.0	38.6071	33
ACGTAAG	140	0.0	38.57143	1
GTAGCAT	4595	0.0	38.43852	29
GGTACCT	4745	0.0	38.40885	8
ACCCGCT	2725	0.0	38.394497	34
ACGGTCT	945	0.0	38.333332	30
ACCTGGT	4715	0.0	38.271477	11