SRR3548891_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548891_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	544493
Sequences flagged as poor quality	0
Sequence length	46
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	23584	4.3313688146587745	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5714	1.049416613253063	No Hit
CTGTCTCTTATACACATCTGACGCACCAACTCTCGTATGCCGTCTT	5236	0.961628524149989	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4597	0.8442716435289342	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2556	0.4694275224842193	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCACCAACTCTCGTAT	1707	0.31350265292666757	No Hit
AAACTGTCTCTTATACACATCTGACGCACCAACTCTCGTATGCCGT	1484	0.27254712181791135	No Hit
AATCTGTCTCTTATACACATCTGACGCACCAACTCTCGTATGCCGT	1473	0.2705268938259996	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCACCAACTCTCGT	1331	0.24444758702132077	No Hit
AAAAACTGTCTCTTATACACATCTGACGCACCAACTCTCGTATGCC	1141	0.20955273988829975	No Hit
GGCACGTGGGGAGCAACATGGAATAAGAAAAGGTCAAGGGAGGCAG	631	0.11588762389966446	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCACCAACTCTCGTATGC	616	0.11313276754705755	No Hit
AGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	598	0.10982693992392922	No Hit
ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	549	0.10082774250541329	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGAGAC	85	0.0	40.0	21
TCTGCGT	30	4.862788E-6	40.0	37
GAGTGTA	20	0.001255187	40.0	26
CGGGTAC	35	3.052428E-7	40.0	6
GATACTC	20	0.001255187	40.0	9
CTGTCGG	20	0.001255187	40.0	2
TCGTTCA	25	7.789243E-5	40.0	16
GCCTTAC	45	1.2187229E-9	40.0	40
GTCGCAA	20	0.001255187	40.0	20
ACACGAC	85	0.0	40.0	26
CTGTATG	20	0.001255187	40.0	21
GTATTCG	20	0.001255187	40.0	9
ATTAGCG	25	7.789243E-5	40.0	1
GGTAAGT	20	0.001255187	40.0	8
ATCTACG	30	4.862788E-6	40.0	1
TTTACGG	50	7.8216544E-11	40.0	2
GAATGCG	30	4.862788E-6	40.0	1
CGCGGCA	20	0.001255187	40.0	4
CATGCGA	55	5.456968E-12	40.0	10
TGAAGCG	20	0.001255187	40.0	24