SRR3548890_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548890_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	558796
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	12457	2.229257188669926	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3047	0.5452794937687456	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2437	0.4361162213043758	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1427	0.25537047509287825	No Hit
CTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCGTCTTCTGCT	1244	0.2226214933535673	TruSeq Adapter, Index 13 (96% over 25bp)
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	924	0.16535551435586512	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTCGTAA	55	1.8189894E-12	45.000004	43
TCGTAAT	55	1.8189894E-12	45.000004	44
TTTTCGT	55	1.8189894E-12	45.000004	41
ATTTACG	25	3.8882237E-5	45.0	1
AACGTTC	20	7.030173E-4	45.0	39
AACCGCA	20	7.030173E-4	45.0	10
GGTACGC	40	6.8048394E-9	45.0	34
ACGCCTA	20	7.030173E-4	45.0	18
CGTATCT	20	7.030173E-4	45.0	43
GCGAAAT	20	7.030173E-4	45.0	28
GTTTATC	25	3.8882237E-5	45.0	41
TGGCGAT	20	7.030173E-4	45.0	32
TTGTCGT	25	3.8882237E-5	45.0	27
CCGTGAT	20	7.030173E-4	45.0	45
CGATTCC	25	3.8882237E-5	45.0	14
TATGCGT	25	3.8882237E-5	45.0	45
GCGTTCC	20	7.030173E-4	45.0	32
TCCTACC	25	3.8882237E-5	45.0	44
TAGCACG	35	1.2104283E-7	45.0	1
CCGTACT	35	1.2104283E-7	45.0	44