SRR3548888_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548888_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	584002
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	13107	2.244341628967024	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3144	0.5383543207043812	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2606	0.446231348522779	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1478	0.25308132506395525	No Hit
CTGTCTCTTATACACATCTGACGCAGTGAGTGTCGTATGCCGTCTTCTGCT	1339	0.22928003671220304	TruSeq Adapter, Index 15 (95% over 23bp)
AATGATACCTGTCTCTTATACACATCTGACGCAGTGAGTGTCGTATGCCGT	1089	0.18647196413710912	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCAGTGAGTGTCGTATGCC	921	0.157704939366646	No Hit
AATCTGTCTCTTATACACATCTGACGCAGTGAGTGTCGTATGCCGTCTTCT	846	0.14486251759411783	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGCTA	65	0.0	45.000004	6
AATCCCG	40	6.8048394E-9	45.0	1
TCGCACG	20	7.0304336E-4	45.0	35
CCCTCGC	20	7.0304336E-4	45.0	35
CTACTAT	20	7.0304336E-4	45.0	41
CGAGTTA	20	7.0304336E-4	45.0	13
GTCGACA	20	7.0304336E-4	45.0	18
GACACTA	20	7.0304336E-4	45.0	45
ACCATAT	20	7.0304336E-4	45.0	21
TAGACCG	20	7.0304336E-4	45.0	24
CGTGAGA	20	7.0304336E-4	45.0	38
CATTGCG	45	3.8380676E-10	45.0	16
TTGTCGC	35	1.2105556E-7	45.0	38
TTGTCAC	40	6.8048394E-9	45.0	12
CACGCGT	20	7.0304336E-4	45.0	38
CACGATA	20	7.0304336E-4	45.0	22
CGACATA	20	7.0304336E-4	45.0	40
CGATTGA	20	7.0304336E-4	45.0	38
TCTAGCG	35	1.2105556E-7	45.0	1
ATCGTAG	20	7.0304336E-4	45.0	1