SRR3548887_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548887_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	626265
Sequences flagged as poor quality	0
Sequence length	46
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	17542	2.8010506734369636	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4213	0.6727184179221256	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3366	0.5374721563555364	No Hit
CTGTCTCTTATACACATCTGACGCAGTGAGTGTCGTATGCCGTCTT	2322	0.3707695624056909	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1909	0.3048230381707424	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCAGTGAGTGTCGTAT	907	0.1448268704142815	No Hit
AATCTGTCTCTTATACACATCTGACGCAGTGAGTGTCGTATGCCGT	797	0.127262420860179	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCAGTGAGTGTCGT	766	0.12231243962220466	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCATAAC	25	7.790586E-5	40.0	26
TCACGCG	30	4.8639613E-6	40.0	1
TCACGCA	35	3.0534102E-7	40.0	34
GTCATAG	20	0.0012553312	40.0	1
GTACCTA	20	0.0012553312	40.0	23
AATCCCG	50	7.8216544E-11	40.0	1
GGTACGT	20	0.0012553312	40.0	8
AGATCTA	20	0.0012553312	40.0	40
TCGCAAT	20	0.0012553312	40.0	25
CAACGTT	20	0.0012553312	40.0	34
CGAGTAC	40	1.925946E-8	40.0	21
TACCACG	50	7.8216544E-11	40.0	1
CGCGGCA	35	3.0534102E-7	40.0	26
TTGTCAC	20	0.0012553312	40.0	12
CGACCGT	20	0.0012553312	40.0	16
GCACGAT	25	7.790586E-5	40.0	40
CGATTTA	25	7.790586E-5	40.0	12
CACGATA	20	0.0012553312	40.0	22
GAATACG	25	7.790586E-5	40.0	1
GCGTTCC	25	7.790586E-5	40.0	26