SRR3548884_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548884_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	640943
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	17646	2.753130933639965	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGT	6830	1.0656173793925514	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCC	6577	1.0261442905219342	No Hit
AATCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCT	5979	0.9328442622822934	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4069	0.6348458443262506	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3468	0.5410777557442705	No Hit
CTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCTGCT	2783	0.43420397757678925	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2323	0.36243472508475794	No Hit
AATGACTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTT	1520	0.23715057345192941	No Hit
AATGATCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCT	1208	0.18847229784863864	No Hit
AACTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCTG	946	0.14759502795100343	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCTTGTGCCATCGTAT	730	0.11389468330257135	No Hit

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCCGAC	35	1.2108103E-7	45.000004	34
ATCCGGT	35	1.2108103E-7	45.000004	13
ATATAAG	35	1.2108103E-7	45.000004	1
TATTCGG	65	0.0	45.000004	2
ACTACCC	35	1.2108103E-7	45.000004	42
ATGAACG	35	1.2108103E-7	45.000004	1
ATAGTCG	35	1.2108103E-7	45.000004	1
CGCAATG	35	1.2108103E-7	45.000004	1
GCGCTTA	35	1.2108103E-7	45.000004	34
GTAACGA	35	1.2108103E-7	45.000004	37
ACGACAG	35	1.2108103E-7	45.000004	1
AGACTCG	20	7.030948E-4	45.0	1
GATACGT	25	3.8888676E-5	45.0	2
ATCTCGA	20	7.030948E-4	45.0	44
GTCGCAT	20	7.030948E-4	45.0	42
ACGCCCA	20	7.030948E-4	45.0	10
GATCGCG	20	7.030948E-4	45.0	9
CACGGTA	20	7.030948E-4	45.0	10
ATAGGCC	20	7.030948E-4	45.0	1
TTTACGG	25	3.8888676E-5	45.0	2