SRR3548879_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548879_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	871234
Sequences flagged as poor quality	0
Sequence length	46
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	23513	2.6988157027847857	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5613	0.6442586033143793	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4409	0.5060638129365934	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2919	0.33504202085777185	No Hit
CTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTT	2864	0.32872913591526504	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTT	997	0.11443538704871481	No Hit
AAACTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGT	882	0.10123571853256415	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGATCGG	20	0.0012556015	40.0	35
TCGTTTG	20	0.0012556015	40.0	33
TCGTTGA	80	0.0	40.0	24
GTCGCGA	35	3.0552474E-7	40.0	36
CTCACGA	20	0.0012556015	40.0	24
TCCATCG	20	0.0012556015	40.0	33
GTCGCCC	30	4.866157E-6	40.0	29
CCCCTAC	25	7.7930985E-5	40.0	38
GATCGAG	20	0.0012556015	40.0	22
CCTAGTT	30	4.866157E-6	40.0	10
TTAGCTT	30	4.866157E-6	40.0	33
CTATCGC	20	0.0012556015	40.0	29
ACCGCAA	35	3.0552474E-7	40.0	21
CGGCATT	55	5.456968E-12	40.0	17
CGTTGAG	50	7.8216544E-11	40.0	1
CGTTGAA	25	7.7930985E-5	40.0	19
ATTAATC	80	0.0	40.0	19
TATATCG	25	7.7930985E-5	40.0	13
TTCGTAG	30	4.866157E-6	40.0	30
GTCTAAC	20	0.0012556015	40.0	24