SRR3548873_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548873_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	556980
Sequences flagged as poor quality	0
Sequence length	46
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	20697	3.715932349455995	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5219	0.9370174871629142	No Hit
CTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTT	4120	0.7397034004811662	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3906	0.7012819131746203	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2103	0.37757190563395454	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGACCATTGTCGTAT	1890	0.3393299579877195	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGACCATTGTCGT	1681	0.3018061689827283	No Hit
AATCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGT	1475	0.26482099895867	No Hit
AAACTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGT	921	0.16535602714639663	No Hit
GCCAACGGGGAGCGAACGGGGAGCAGCCCAGAGCCTGAATCAGTAT	712	0.12783223814140543	No Hit
AGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	620	0.11131458939279686	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCC	557	0.10000359079320623	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTGA	60	0.0	40.000004	24
GTTTCGT	30	4.86299E-6	40.000004	36
CGTTGAT	60	0.0	40.000004	25
ACTTACG	30	4.86299E-6	40.000004	1
ATCGTTG	60	0.0	40.000004	23
TTGAGCG	30	4.86299E-6	40.000004	1
AACGGCA	30	4.86299E-6	40.000004	22
TCAGCTT	30	4.86299E-6	40.000004	13
GTTCGTA	30	4.86299E-6	40.000004	30
CGAGGAT	30	4.86299E-6	40.000004	12
ACAGCCG	30	4.86299E-6	40.000004	1
GACGGTC	30	4.86299E-6	40.000004	9
GGCATGT	30	4.86299E-6	40.000004	9
CGCGTTA	30	4.86299E-6	40.000004	30
CATCCGG	60	0.0	40.000004	2
TTATTCG	30	4.86299E-6	40.000004	1
TATCGCG	30	4.86299E-6	40.000004	1
TCACGGC	20	0.0012552117	40.0	15
GCGAGAC	55	5.456968E-12	40.0	21
CTTCGCG	20	0.0012552117	40.0	1