SRR3548872_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548872_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	636569
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	14823	2.3285771063309713	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3424	0.5378835601482321	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2742	0.43074670617010885	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCACATGGTGTCGTATGCCGT	1849	0.2904634061664957	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCACATGGTGTCGTATGCC	1717	0.26972724088040734	No Hit
AATCTGTCTCTTATACACATCTGACGCACATGGTGTCGTATGCCGTCTTCT	1582	0.24851979911054417	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1551	0.24364994211153856	No Hit
CTGTCTCTTATACACATCTGACGCACATGGTGTCGTATGCCGTCTTCTGCT	1540	0.24192192833769788	TruSeq Adapter, Index 21 (95% over 23bp)
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	883	0.13871237839103068	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTGT	20	7.0309115E-4	45.0	31
CTAGACG	20	7.0309115E-4	45.0	1
GTACCTC	45	3.8380676E-10	45.0	22
ATCTCGC	20	7.0309115E-4	45.0	11
CGAACCT	20	7.0309115E-4	45.0	44
CGAACCC	35	1.2107921E-7	45.0	23
ACTGCGC	20	7.0309115E-4	45.0	27
CTCCGTT	25	3.8888382E-5	45.0	44
GTATTCG	45	3.8380676E-10	45.0	31
CGAGTGA	20	7.0309115E-4	45.0	26
TTTACGC	20	7.0309115E-4	45.0	33
GCGAATC	40	6.8066583E-9	45.0	37
CGTGCAA	20	7.0309115E-4	45.0	26
GACGTGA	20	7.0309115E-4	45.0	4
ATTACGC	25	3.8888382E-5	45.0	18
ACTCTCG	20	7.0309115E-4	45.0	27
TCCTCGA	20	7.0309115E-4	45.0	18
CACGAAT	20	7.0309115E-4	45.0	35
TAACGAT	20	7.0309115E-4	45.0	29
ATCACGT	20	7.0309115E-4	45.0	44