SRR3548867_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548867_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1238872
Sequences flagged as poor quality	0
Sequence length	46
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	20011	1.615259687845072	No Hit
CTGTCTCTTATACACATCTGACGCCACTAACCTCGTATGCCGTCTT	5473	0.4417728385176192	RNA PCR Primer, Index 29 (95% over 21bp)
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4762	0.3843819216190212	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCACTAACCTCGTAT	3991	0.32214788937033045	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3853	0.3110087240651173	No Hit
AATCTGTCTCTTATACACATCTGACGCCACTAACCTCGTATGCCGT	3333	0.2690350576976476	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCCACTAACCTCGT	2676	0.21600294461413286	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTT	2505	0.20220006586636877	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2400	0.1937246140037066	No Hit
AAACTGTCTCTTATACACATCTGACGCCACTAACCTCGTATGCCGT	1392	0.11236027612214981	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGTAA	25	7.795004E-5	40.000004	21
TTGGACG	20	0.0012558063	40.000004	37
CCGATTC	20	0.0012558063	40.000004	16
GCGCCTA	20	0.0012558063	40.000004	35
CACGATC	25	7.795004E-5	40.000004	22
TCGATAG	25	7.795004E-5	40.000004	1
ATCGTAC	25	7.795004E-5	40.000004	29
TACGCCT	20	0.0012558063	40.000004	19
TCTACCG	25	7.795004E-5	40.000004	1
TCGCTTA	20	0.0012558063	40.000004	35
TTGACGT	25	7.795004E-5	40.000004	12
TCGTCGA	20	0.0012558063	40.000004	24
TCCAACG	50	7.8216544E-11	40.000004	1
CGAGCAT	50	7.8216544E-11	40.000004	10
CGTGTAA	20	0.0012558063	40.000004	22
GACGATT	25	7.795004E-5	40.000004	12
GCTAACG	40	1.9284926E-8	40.000004	1
CAATCGA	25	7.795004E-5	40.000004	33
TCGACGA	25	7.795004E-5	40.000004	10
CGTTTAA	20	0.0012558063	40.000004	27