SRR3548863_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548863_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	701100
Sequences flagged as poor quality	0
Sequence length	46
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	14366	2.049065753815433	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3660	0.5220367993153616	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2869	0.4092140921409214	No Hit
CTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCTT	2695	0.38439594922265014	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1817	0.2591641705890743	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCGAGAACTTCGTAT	1307	0.1864213378975895	No Hit
AATCTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGT	1152	0.16431322207958923	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCCGAGAACTTCGT	1134	0.16174582798459564	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTT	941	0.13421765796605334	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTACGT	25	7.791538E-5	40.000004	9
TTTACGG	50	7.8216544E-11	40.000004	2
GAATCGG	25	7.791538E-5	40.000004	2
CGCTGTT	25	7.791538E-5	40.000004	14
TAACGGA	25	7.791538E-5	40.000004	13
CGTTCTA	25	7.791538E-5	40.000004	13
TAGCCGT	25	7.791538E-5	40.000004	30
CGTTAGC	25	7.791538E-5	40.000004	31
TACGCAG	25	7.791538E-5	40.000004	1
CCTCCGT	25	7.791538E-5	40.000004	37
CGTGTCA	25	7.791538E-5	40.000004	37
CCGGTTA	25	7.791538E-5	40.000004	19
ACGTACG	25	7.791538E-5	40.000004	1
ATCATTC	25	7.791538E-5	40.000004	19
GATTACG	25	7.791538E-5	40.000004	1
CGATACC	25	7.791538E-5	40.000004	33
CCGTTGC	25	7.791538E-5	40.000004	33
ATACACG	25	7.791538E-5	40.000004	1
TGTCCAA	25	7.791538E-5	40.000004	13
TCACGCC	35	3.0541014E-7	40.0	14