SRR3548857_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548857_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	563691
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCC	6746	1.19675495972084	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCGT	5182	0.9192979841792756	No Hit
AATCTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCGTCTTCT	5174	0.9178787669130782	No Hit
CTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCGTCTTCTGCT	2882	0.5112730201475632	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1672	0.2966164086352275	No Hit
AATGACTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCGTCTT	1239	0.21980127410230074	No Hit
AATGATCTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCGTCT	888	0.15753311654789592	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	857	0.15203364964138155	No Hit
AACTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCGTCTTCTG	778	0.1380188791376836	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	630	0.11176335971303426	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCAGACAGAGTCGTAT	619	0.10981193597201303	No Hit
AAACTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCGTCTTCT	583	0.10342545827412536	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AATCCGA	20	7.0302223E-4	45.000004	17
TCGTTCT	20	7.0302223E-4	45.000004	41
ATTACGG	35	1.2104465E-7	45.000004	2
TTCGTGG	20	7.0302223E-4	45.000004	2
CACGATA	20	7.0302223E-4	45.000004	20
TTCAACG	20	7.0302223E-4	45.000004	1
TGACGTC	20	7.0302223E-4	45.000004	44
ACGATTG	20	7.0302223E-4	45.000004	1
GCCGAAT	20	7.0302223E-4	45.000004	32
TAACACG	20	7.0302223E-4	45.000004	1
CGAATAT	85	0.0	45.000004	13
GCGATAT	20	7.0302223E-4	45.000004	35
ACGTCCA	20	7.0302223E-4	45.000004	35
AATTACG	20	7.0302223E-4	45.000004	1
AACCTCG	20	7.0302223E-4	45.000004	1
TGGATCG	20	7.0302223E-4	45.000004	37
CCGAATT	20	7.0302223E-4	45.000004	33
CCGAACA	20	7.0302223E-4	45.000004	27
TCATACG	35	1.2104465E-7	45.000004	1
GCTACGA	85	0.0	45.000004	9