SRR3548852_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548852_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	474853
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCTGACACTGTCGTATGCC	14252	3.001349891440088	No Hit
AATCTGTCTCTTATACACATCTGACGCTGACACTGTCGTATGCCGTCTTCT	12653	2.6646141016272407	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTGACACTGTCGTATGCCGT	11993	2.5256237193405116	No Hit
CTGTCTCTTATACACATCTGACGCTGACACTGTCGTATGCCGTCTTCTGCT	5285	1.112976015735396	TruSeq Adapter, Index 13 (95% over 23bp)
AATGACTGTCTCTTATACACATCTGACGCTGACACTGTCGTATGCCGTCTT	2928	0.6166118777811238	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2810	0.5917620821601632	No Hit
AATGATCTGTCTCTTATACACATCTGACGCTGACACTGTCGTATGCCGTCT	2418	0.5092102187413788	No Hit
AACTGTCTCTTATACACATCTGACGCTGACACTGTCGTATGCCGTCTTCTG	1828	0.384961240636576	TruSeq Adapter, Index 19 (95% over 21bp)
AATGATACGGCGACTGTCTCTTATACACATCTGACGCTGACACTGTCGTAT	1439	0.30304115168273127	No Hit
AAACTGTCTCTTATACACATCTGACGCTGACACTGTCGTATGCCGTCTTCT	1353	0.2849302836877939	No Hit
AAAAACTGTCTCTTATACACATCTGACGCTGACACTGTCGTATGCCGTCTT	985	0.20743261598852697	No Hit
AATGCTGTCTCTTATACACATCTGACGCTGACACTGTCGTATGCCGTCTTC	747	0.15731184176997934	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	643	0.1354103269854039	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCTGACACTGTCGTATGCCGTCT	534	0.11245585475926234	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	514	0.10824402499299782	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTGACACTGTCGTATGCCGG	506	0.10655929308649202	No Hit
ACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATACA	501	0.1055063356449259	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTAGCG	25	3.8873353E-5	45.000004	1
GGTGTAT	25	3.8873353E-5	45.000004	36
AATCAGT	25	3.8873353E-5	45.000004	38
CCGATTT	25	3.8873353E-5	45.000004	45
CACGGCA	25	3.8873353E-5	45.000004	40
CGACGAT	25	3.8873353E-5	45.000004	20
TCCGATT	25	3.8873353E-5	45.000004	44
CGGCCAA	25	3.8873353E-5	45.000004	26
ATTACGG	50	2.1827873E-11	45.000004	2
CAACCGA	35	1.209919E-7	45.000004	24
CGACAAT	50	2.1827873E-11	45.000004	20
AGCGGTG	25	3.8873353E-5	45.000004	17
CTAACCG	25	3.8873353E-5	45.000004	1
GAGACGA	25	3.8873353E-5	45.000004	16
ATCCCTC	25	3.8873353E-5	45.000004	42
CGCTACG	50	2.1827873E-11	45.000004	1
ACTACTA	25	3.8873353E-5	45.000004	27
CGGTGAT	25	3.8873353E-5	45.000004	41
CATACGA	70	0.0	45.000004	18
ATGACGG	25	3.8873353E-5	45.000004	2